View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_1 (Length: 861)
Name: NF9527_low_1
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 747; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 13 - 795
Target Start/End: Complemental strand, 39999530 - 39998748
Alignment:
| Q |
13 |
agcagagacatgctgtagggttttttccataataatgtcattggcccgagggcaggaatgctggtagaagttcttcctcaggatgcctccttgacaagtc |
112 |
Q |
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| T |
39999530 |
agcagagacatactgtagggttttttccataataatgtcattggcctgagggcaggaatgctggtagaagttcttccccaggatgcctccttgacaaatc |
39999431 |
T |
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| Q |
113 |
acaacgaaacttaaaagaaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatcctttta |
212 |
Q |
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| T |
39999430 |
acaacgaaacttaaaagtaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatcctttta |
39999331 |
T |
|
| Q |
213 |
tagtatcatatttccatatagtcaaatagcaatggcattacttcatttaaattttatgggaaaggttagtttcaaattatgtcctaaacttttttatcag |
312 |
Q |
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| T |
39999330 |
tagtatcatatttccatatagtcaaatagcaatggcattacttcatttaaattttatgggaaagattagtttcaaattatgtcctaaacttttttatcag |
39999231 |
T |
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| Q |
313 |
taagaatcaaatttgctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgccctactatttttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39999230 |
taagaatcaaatttgctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgtcctactatttttt |
39999131 |
T |
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| Q |
413 |
cataataaaaaagtctagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaata |
512 |
Q |
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| T |
39999130 |
cataataaaaaagtctagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaata |
39999031 |
T |
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| Q |
513 |
aatttaggatgaggggaagatgcaccagtataaggtaggaaagacctttgcccttaaagagcacttccaatcttcaaaggtataactgactcaaatctga |
612 |
Q |
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| T |
39999030 |
aatttaggatgaggggacgatgcaccagtataaggtaggaaagacctttgcccttaaagagcacttccaatcttcaaaggtataactgactcaaatctga |
39998931 |
T |
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| Q |
613 |
aacctccggatccaagacatgtcattttacattttaccaccaaacctaactcttggagtttgttgctcttagtctgggataggtatctgcttagacataa |
712 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39998930 |
aacctccggatccaagacctgtcattttacattttaccaccaaacctaactcttggagtttgttgctcttagtctgggataggtatctgcttagacataa |
39998831 |
T |
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| Q |
713 |
ctgatattaaccttcatattgtagtgatagcacatagctgatgctttttactccaccctccccaggttgtgttaatcttttat |
795 |
Q |
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| T |
39998830 |
ctgatattaaccttcatattgtagtgatagcacatagctgatgctttttactccaccctccccaggttgtgttaatcttttat |
39998748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 814 - 845
Target Start/End: Complemental strand, 39998747 - 39998716
Alignment:
| Q |
814 |
tttattttcttcatcatgctcgcttgtaattc |
845 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39998747 |
tttattttcttcatcatgctcgcttgtaattc |
39998716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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