View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_12 (Length: 455)
Name: NF9527_low_12
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 136 - 452
Target Start/End: Complemental strand, 49563740 - 49563418
Alignment:
| Q |
136 |
tgtaacctattgttacgatacatccaggccgatcagggcgtaactctcaaacatgagtaataaggagttacgatacaccaagccattcgggggttacaaa |
235 |
Q |
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| T |
49563740 |
tgtaacctattgttacgatacatccaggccgatcagggcgtaactctcgaacatgagtaataaggagttac---acaccaagccattagggggttacaaa |
49563644 |
T |
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| Q |
236 |
tattttgagtagtagcaatgagtttgaccagaaccaaacccaatctgaccgaggaacacccttaggtcccataatatcagtagcgcctcctcagacgctg |
335 |
Q |
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| T |
49563643 |
tattttgaggagtagcaatgagtttgaccaaaaccaaacccaatctgaccgaggaacacccttaggtcccataatatcagtagcg---cctcagacgctg |
49563547 |
T |
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| Q |
336 |
agggaacactgccaccgcctccaaatgattcactgccaccgtctcagagctcttctcaactccccaaaatgt------------cttcatctacatccac |
423 |
Q |
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| T |
49563546 |
aggtaacactgccaccgcctccaaatgattcactgccaccgtctcagagctcttctcaactccccaaaatgttgttgttacctccttcatctacatccac |
49563447 |
T |
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| Q |
424 |
gccgctctctcaacaacctttgcttctcc |
452 |
Q |
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| T |
49563446 |
gccgctctctcaacaaccttttcttctcc |
49563418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 49567804 - 49567721
Alignment:
| Q |
55 |
acaagtgatgataaatcaactcgcgaccatactttattcattcattcaaagtaccaaatacatgtcatcgatgctgaaggatgtaaccta |
144 |
Q |
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| T |
49567804 |
acaagtggtgataaatcaactcgcgaccatactt-----attcattcaaa-taccaaatacatgtcatcgatgctgaaggatgtaaccta |
49567721 |
T |
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