View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_13 (Length: 427)
Name: NF9527_low_13
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 9864941 - 9864542
Alignment:
| Q |
18 |
gtaacaaatggaaagtaaaaagtagcnnnnnnnntccgagtacattgccgtcgcgattgcaagcttcccgatatctgactttccgattttgagctgtgtt |
117 |
Q |
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| T |
9864941 |
gtaacaaatggaaagtaaaaagtagcaaaaaaaatccgagtacattgccgtcgcgattgcaagcttcccgatatctgactttccgattttgagctgtgtt |
9864842 |
T |
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| Q |
118 |
agtaaacgcgtcaacacaggcgaacctgtactagctagtagaagggaaagagctgttgtgaattctaatattttatctctgtttgggaagtaagttacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9864841 |
agtaaacgcgtcaacacaggcgaacctgtactagctagtagaagggaaagagctgttgtgaattctaatattttatctctgtttgggaagtaagttacaa |
9864742 |
T |
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| Q |
218 |
aaggggagaaaataattcctagtaagattgttatgcaaattcctggataagcaactctaacatgtcttggtggnnnnnnnaatagtatataagggtccat |
317 |
Q |
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| T |
9864741 |
aaggggagaaaataattcctagtaagattgttatgcaaattcctggataagcaactctaacatgtcttggtggtttttttaatagtatataagggtccat |
9864642 |
T |
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| Q |
318 |
ttctatccctaatgcaaacatgtaacacatcataccaaaatcaattataaatccaaatgtcctgttgaatttctcaaatagattgcgtacaattcctatg |
417 |
Q |
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| T |
9864641 |
ttctatccctaatgcaaacatgtaacacatcataccaaaatcaattataaatccaaatgtcctgttgaatttctcaaatagattgcgtacaattcctatg |
9864542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 13954834 - 13954910
Alignment:
| Q |
301 |
agtatataagggtccatttctatccctaatgcaaacatgtaacacatcataccaaaatcaattataaatccaaatgt |
377 |
Q |
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|||| |||||| |||||||||| || || |||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
13954834 |
agtacataaggatccatttctacacccaaagcaaacatgtaacacatcattccaaaatcaatgataaatccaaatgt |
13954910 |
T |
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