View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_14 (Length: 398)
Name: NF9527_low_14
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 194 - 377
Target Start/End: Original strand, 48197883 - 48198066
Alignment:
| Q |
194 |
cattcatcaacaatagaaatagcaatcaaatcttctctgagttatctcactattgaacgccgtaaagaggaacatacacccatttaaaaaatagtctcgg |
293 |
Q |
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| T |
48197883 |
cattcatcaacaatagcaatagcaatcaaatcttctctgagttatctcactattgaaggccgtaaagaggaacatacacccatttaaaaaatagtcttgg |
48197982 |
T |
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| Q |
294 |
agccaccattgtcgatcgcattaaaatcatgannnnnnnncgacttctgctgcactacagtgccatagcactgctgtagccact |
377 |
Q |
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| T |
48197983 |
agccactattgtcgatcgcattaaaatcatgattttttttcgacttctgctgcactacagtgccatagcactgctgtagccact |
48198066 |
T |
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Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 48197690 - 48197834
Alignment:
| Q |
1 |
gcacacatgaattgtaaagcaaaaagaaaaatcatatgatataacttgagtcttacttatataatcctagaaaaccttcatgctttagcaacttattcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48197690 |
gcacacatgaattgtaaagcaaaaagaaaaatcatatgatataacttgagtcttacttatataatcctagaaaaccttcatgctttagcaacttattcac |
48197789 |
T |
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| Q |
101 |
agattggcacacaccaagagtatggaatcctccagtccttgtctg |
145 |
Q |
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| T |
48197790 |
agattggcacacaccaagagtatggaatcctcccgtccttgtctg |
48197834 |
T |
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