View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9527_low_16 (Length: 364)
Name: NF9527_low_16
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 2923217 - 2923560
Alignment:
| Q |
16 |
acataattaaacttctcaaatgtagaactttcaaagggaaggaacttgaacatactagccaaactagatactggagcttgaactgttcctatgacaagtg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2923217 |
acataattaaacttctcaaatgtagaactttcaatgggaaggaacttgaacatactagccaaactagatactggagcttgaactgatcctatgacaagtg |
2923316 |
T |
|
| Q |
116 |
ttttgaatgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaa |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2923317 |
ttttgaatgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaa |
2923416 |
T |
|
| Q |
216 |
atctgcttgaataatgaatggaaaattagtgaccatctctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgatta |
315 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2923417 |
atctgcttgaataatgaaaggaaaattagtgaccatccctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgatta |
2923516 |
T |
|
| Q |
316 |
gggaaggctagtgtcacaacctattcttccacatctgtgctcct |
359 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
2923517 |
gggaaggctagtgtcacaacccattcttccacatctgttctcct |
2923560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 37798071 - 37798414
Alignment:
| Q |
16 |
acataattaaacttctcaaatgtagaactttcaaagggaaggaacttgaacatactagccaaactagatactggagcttgaactgttcctatgacaagtg |
115 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||| | | ||||| ||||||| |
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| T |
37798071 |
acatgattaaacttctcaaatggcgaactttcaatgggaaggaacttgaacatacgagccaaacttgataccggagcttgatcggatcctacaacaagtg |
37798170 |
T |
|
| Q |
116 |
ttttgaatgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaa |
215 |
Q |
| |
|
||||||||| ||| | ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37798171 |
ttttgaatgtatccataaaggccgatggaacacattcaagtatcccttggttccatttattatccaagagaattgtctccctagatgaggcaaggacaaa |
37798270 |
T |
|
| Q |
216 |
atctgcttgaataatgaatggaaaattagtgaccatctctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgatta |
315 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
37798271 |
atctgcttgaataatgaaagggaaattagtgaccatctctgtaggaagaaatgcatagacccctggtgagcttttacccctatgaagcctctcctgattt |
37798370 |
T |
|
| Q |
316 |
gggaaggctagtgtcacaacctattcttccacatctgtgctcct |
359 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||| ||||| |
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|
| T |
37798371 |
gggaaggccagtgtcacaacccattcttcaacatctgttctcct |
37798414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 348
Target Start/End: Original strand, 2949303 - 2949549
Alignment:
| Q |
102 |
tcctatgacaagtgttttgaatgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgat |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| |||||||||||| | |||||||| |||| ||||| |||| |||||||||||||||||||||||| |
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| T |
2949303 |
tcctgtgacaagtgttttgaatgcatctataaaagctgatggaacatattcaagtatccctttattccacttatcatccaagagaattgtctcccttgac |
2949402 |
T |
|
| Q |
202 |
gaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatctctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaa |
301 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || | ||||||||| |||| || | | |||| |
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|
| T |
2949403 |
gaggcaagaacaaaatctgcctgaattatgaatggaaaattagtgaccatctctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaa |
2949502 |
T |
|
| Q |
302 |
gtctctcctgattagggaaggctagtgtcacaacctattcttccaca |
348 |
Q |
| |
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| |||||||| | ||||||||| | ||||||||| | ||||||||| |
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|
| T |
2949503 |
gcctctcctggtgagggaaggccaatgtcacaacacactcttccaca |
2949549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 52 - 287
Target Start/End: Complemental strand, 3010155 - 3009920
Alignment:
| Q |
52 |
ggaaggaacttgaacatactagccaaactagatactggagcttgaactgttcctatgacaagtgttttgaatgcatctaaaaatgctgatggaacacagt |
151 |
Q |
| |
|
|||||||||||||||||| || ||| || |||| |||||||| | | | || | |||||||||||||||||||||| ||| ||| |||||||| | | |
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| T |
3010155 |
ggaaggaacttgaacatataaggcaagctggatagtggagcttcatcagaaccagtcacaagtgttttgaatgcatctataaaagctaatggaacatatt |
3010056 |
T |
|
| Q |
152 |
caagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccat |
251 |
Q |
| |
|
|||| || ||||| ||||| |||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3010055 |
caagaatcccttgattccacttatcatcaaagagaattgtctcccttgacgaggcaagaacaaaatctgcttgaattatgaatggaaaattagtgaccat |
3009956 |
T |
|
| Q |
252 |
ctctgtaggaagaaaggcatagacccctggtgagct |
287 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||| |
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|
| T |
3009955 |
ctctgtaggaagaaatgcataaacccctggtaagct |
3009920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 109 - 287
Target Start/End: Original strand, 2932657 - 2932835
Alignment:
| Q |
109 |
acaagtgttttgaatgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaa |
208 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| | |||||||| ||||| ||||| |||| || ||| |||||||| |||||||| ||||||| |
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|
| T |
2932657 |
acaagtgttttgaatgcatctacaaaggctgatggaacatattcaagtatcccttgattccacttatcattcaatagaattgtttcccttgacgaggcaa |
2932756 |
T |
|
| Q |
209 |
ggacaaaatctgcttgaataatgaatggaaaattagtgaccatctctgtaggaagaaaggcatagacccctggtgagct |
287 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| |
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|
| T |
2932757 |
gaacaaaatctgcttgaattatgaagggaaagttagtaaccatctctgtaggaagaaatgcataaacccctggagagct |
2932835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 28026771 - 28027105
Alignment:
| Q |
19 |
taattaaacttctcaaatgtagaactttcaaagggaaggaacttgaacatactagccaaactagatactggagcttgaactgttcctatgacaagtgttt |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| | | ||||| |||||||||| |
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|
| T |
28026771 |
taattaaacttctcaaatggagaactttcaatgggaaggaacttgaacatacgagccaaactggatactggagcttgatcagatcctacaacaagtgttt |
28026870 |
T |
|
| Q |
119 |
tgaatgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatc |
218 |
Q |
| |
|
|||||||||| | ||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28026871 |
tgaatgcatccataaaggctattggaacacattcaagtatcccttggttccatttattatccaagagaattgtctcccttgatgaagcaaggacaaaatc |
28026970 |
T |
|
| Q |
219 |
tgcttgaataatgaatggaaaattagtgaccatctctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattaggg |
318 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || || ||||| ||||||||||| || |
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|
| T |
28026971 |
ggcttgaataatgaaaggaaaattagtgaccatctctgtaggcagaaatgcatagacccccggtgagcttttacccctgtgaagcctctcctgatttggc |
28027070 |
T |
|
| Q |
319 |
aaggctagtgtcacaacctattcttccacatctgt |
353 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |
|
|
| T |
28027071 |
aaggcgagtgtcacaacccattcttccacatctgt |
28027105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 29 - 336
Target Start/End: Complemental strand, 1504487 - 1504180
Alignment:
| Q |
29 |
tctcaaatgtagaactttcaaagggaaggaacttgaacatactagccaaactagatactggagcttgaactgttcctatgacaagtgttttgaatgcatc |
128 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||||| | ||| ||| || ||| ||||||||| | ||| |||| || |||||||||||||||||| |
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|
| T |
1504487 |
tctcaaaaggagaactttcaattggaaggaacttgaacaaattaggcaagctggatgctggagcttcatctgatcctgcgagaagtgttttgaatgcatc |
1504388 |
T |
|
| Q |
129 |
taaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaata |
228 |
Q |
| |
|
|| ||| ||||| |||||| | |||||||| ||||| ||||| ||||||||||| | |||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
1504387 |
tataaaagctgacggaacatattcaagtatcccttgattccacttattatccaacataattgtctcccttgatgaagcaaggaaaaaatctgcctgaatt |
1504288 |
T |
|
| Q |
229 |
atgaatggaaaattagtgaccatctctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtg |
328 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || | || || || | ||| ||||||||||| ||||| || | || |
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|
| T |
1504287 |
atgaaaggaaaattagtgaccatttctgtaggaagaaatgcatagacccctggcaaggtctttcccctgtaaagcctctcctgatttgggaatgccaatg |
1504188 |
T |
|
| Q |
329 |
tcacaacc |
336 |
Q |
| |
|
|||||||| |
|
|
| T |
1504187 |
tcacaacc |
1504180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 4914193 - 4914051
Alignment:
| Q |
109 |
acaagtgttttgaatgcatctaaaaatgctgatggaacacagtcaagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaa |
208 |
Q |
| |
|
||||||||| ||||||| || | ||| ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4914193 |
acaagtgttctgaatgcttccataaaagctgatggaacgcattcaagtatcccttgattccacttattatccaagagaattgtctcccttgatgaggcaa |
4914094 |
T |
|
| Q |
209 |
ggacaaaatctgcttgaataatgaatggaaaattagtgaccat |
251 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
4914093 |
ggacaaaatcagcttgaattatgaaaggaaaattagtgaccat |
4914051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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