View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_20 (Length: 322)
Name: NF9527_low_20
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 28036471 - 28036176
Alignment:
| Q |
20 |
ggtagagatccagaaagcgttgaacatattgtgaattgtggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttg |
119 |
Q |
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| T |
28036471 |
ggtagagatccagaaagtgttgaacatattgtgaattgtggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttg |
28036372 |
T |
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| Q |
120 |
ttgcttgggctatttcagaacttgcagcacatcatccaaaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttt |
219 |
Q |
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| T |
28036371 |
ttgcttgggctatttcagaacttgcagcacatcatccaaaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttt |
28036272 |
T |
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| Q |
220 |
tgaaaccattcaagaacatagtaagtattctattacaaacaaacaaaacatgtcctccttacattctctagttatggctagcaacaccaacaccaa |
315 |
Q |
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| T |
28036271 |
tgaaaccattcaagaacatagtaagtattctattaccaacaaacaaaacatgtcctccttacattctcttgttatggctagcaacaccaacaccaa |
28036176 |
T |
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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 253
Target Start/End: Original strand, 8756715 - 8756910
Alignment:
| Q |
58 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
157 |
Q |
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| T |
8756715 |
tggtgtttgttctgtttttgcgaaaattcttaaagaaggtcctatgaaagttcaaggtgttgttgcttgggctgtttctgaacttgctgctaattatcct |
8756814 |
T |
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| Q |
158 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctatt |
253 |
Q |
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| T |
8756815 |
aaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctatt |
8756910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 32031687 - 32031502
Alignment:
| Q |
58 |
tggtgtttgttcggtttttgcgaaagtactcaaagatggtcacatgaaggttcaaatagttgttgcttgggctatttcagaacttgcagcacatcatcca |
157 |
Q |
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| T |
32031687 |
tggtgtttgttctgttttcgcgaagattcttaaagaaggtcctatgaaagttcaagctgttgtagcttgggctgtttctgaacttgtttctaagtatcct |
32031588 |
T |
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| Q |
158 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaa |
243 |
Q |
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| T |
32031587 |
aaatgtcaagatgtttttgctcagcataatattgttaggttgcttgtgagtcacattgcttttgaaactgttcaagaacatagtaa |
32031502 |
T |
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