View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_21 (Length: 295)
Name: NF9527_low_21
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_21 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 12039094 - 12038816
Alignment:
| Q |
1 |
ataaaggattgcatttgcttaacatctgaagtcatcaatgttttacacaaaaaatcttttggaggaaacttggctttgaaggtggatattgctgaagctt |
100 |
Q |
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||||||||||| |||||| |||||| ||| |||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||| |||||| |
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| T |
12039094 |
ataaaggattgtatttgcaagacatctaaagccatcaacgttttacacaaaaaatcttttgtaggaaaccttgctttgaaggtggatattgctaaagctt |
12038995 |
T |
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| Q |
101 |
ttgacactctagattggaagtttctaattgaagttcttgaagcttttggttt-aatggaaagttttgcaagtggatcaaagcaattctttcttctgcaaa |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
12038994 |
ttgacactctagattggaagtttctcattgaagttcttgaagcttttggttttaatggaaagttttgcaagtggatcaaagctattctttcttctgcgaa |
12038895 |
T |
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| Q |
200 |
aatctctatagccgtcaatggaaaattacatggatttttctcttgtaccagaggggtgcggcagggagatcccctttct |
278 |
Q |
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| T |
12038894 |
aatctctatagccttcaatggaaaattacatggatttttctcttgtaccagaggggtgcggcagggagatcccctttct |
12038816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 22164496 - 22164225
Alignment:
| Q |
1 |
ataaaggattgcatttgcttaacatctgaagtcatcaatgttttacacaaaaaatcttttggaggaaacttggctttgaaggtggatattgctgaagctt |
100 |
Q |
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||||| ||||| || || || |||||||||| |||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||| | |||| | |
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| T |
22164496 |
ataaaagattgtatctgtttgacatctgaagccatcaatgttctacacaaaaaatcttttggaggaaatcttgctttgaaggtggcaattacaaaagcat |
22164397 |
T |
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| Q |
101 |
ttgacactctagattggaagtttctaattgaagttcttgaagcttttggttt-aatggaaagttttgcaagtggatcaaagcaattctttcttctgcaaa |
199 |
Q |
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| T |
22164396 |
ttgacactcttgattggaattttctcattgaagttcttgaagcttttggttttaattctattttttgcaaatggatcaaaaatattctttcttctgcaaa |
22164297 |
T |
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| Q |
200 |
aatctctatagccgtcaatggaaaattacatggatttttctcttgtaccagaggggtgcggcagggagatcc |
271 |
Q |
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| T |
22164296 |
aatctcaatagccataaatggaaaacttcatggttttttctcctgtactagaggagtgaggcagggagatcc |
22164225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 5152421 - 5152315
Alignment:
| Q |
4 |
aaggattgcatttgcttaacatctgaagtcatcaatgttttacacaaaaaatcttttggaggaaacttggctttgaaggtggatattgctgaagcttttg |
103 |
Q |
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||||| ||||||||| |||| ||||||| ||||||||| | ||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||| |
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| T |
5152421 |
aaggactgcatttgcctaacctctgaagcgatcaatgttctgaacaaaaagtcttttggaggaaacttggccatgaagatagatattgctaaagcttttg |
5152322 |
T |
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| Q |
104 |
acactct |
110 |
Q |
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| T |
5152321 |
acactct |
5152315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 12302788 - 12302857
Alignment:
| Q |
41 |
ttttacacaaaaaatcttttggaggaaacttggctttgaaggtggatattgctgaagcttttgacactct |
110 |
Q |
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| T |
12302788 |
ttttacataaaaagtcttttggaggcaacttagctttgaaggtggacatagccaaagcttttgatactct |
12302857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 37147 - 37086
Alignment:
| Q |
49 |
aaaaaatcttttggaggaaacttggctttgaaggtggatattgctgaagcttttgacactct |
110 |
Q |
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| T |
37147 |
aaaaaatcttttggaggcaacttagctttgaaggtggacatagccaaagcttttgatactct |
37086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 18923590 - 18923524
Alignment:
| Q |
56 |
cttttggaggaaacttggctttgaaggtggatattgctgaagcttttgacactctagattggaagtt |
122 |
Q |
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| T |
18923590 |
cttttgcaggtaacttggctttcaaggtagatatttctaaagcttttgataccctagaatggaagtt |
18923524 |
T |
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