View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_22 (Length: 294)
Name: NF9527_low_22
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_22 |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 8460118 - 8460409
Alignment:
| Q |
2 |
taaaaactaatccattcttttaagttattcttttacatacaagggaattaatcttaggctttactatcttacnnnnnnnggtgaggnnnnnnnnngtgta |
101 |
Q |
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| T |
8460118 |
taaaaactaatccattcttttaagttattcttttacatactagggaattaatcttaggctttactatcttactttttttggtgaggaaaaaaaa-gtgta |
8460216 |
T |
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| Q |
102 |
acgacattagttaccttctacaaattgctattatcaagagaaagacaaactcattgaagtaataattaataactgtagtaagatcaattacacagtagac |
201 |
Q |
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| T |
8460217 |
acgacattagttaccttctacaaattgctattatcaagagaaagacaaactcattcaagtaataattaataactgtagtaagatcaattacacaatagac |
8460316 |
T |
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| Q |
202 |
attcaatcaactaattaatgttagaggatggggtttacaagagactactacacatttatttttatattgcgacacatttcgcaatctgtgggt |
294 |
Q |
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| T |
8460317 |
attcaatcaactaattaatgttagaggatggggtttacaaaagactactacacatttatttttaaattgcgacacatttcgcaatctgtgggt |
8460409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 8466479 - 8466577
Alignment:
| Q |
97 |
gtgtaacgacattagttaccttctacaaattgctattatcaagagaaagacaaactcattgaagtaataattaataactgtagtaagatcaattacaca |
195 |
Q |
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| T |
8466479 |
gtgtaacgacattagttaccttctacaaattgctattatcaggagaaagacaaactcattgcagtaataattaataactctagtaagatcaattacaca |
8466577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 8466380 - 8466432
Alignment:
| Q |
2 |
taaaaactaatccattcttttaagttattcttttacatacaagggaattaatct |
55 |
Q |
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| T |
8466380 |
taaaaactaatccattcttt-aagttattcttttacacacaaaggaattaatct |
8466432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 16423462 - 16423388
Alignment:
| Q |
220 |
tgttagaggatggggtttacaagagactactacacatttatttttatattgcgacacatttcgcaatctgtgggt |
294 |
Q |
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| T |
16423462 |
tgttggagggtgcggtttacaagagaatgctacacatttatttttaaattgtgacacatttctcaatctgtgggt |
16423388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 28407776 - 28407824
Alignment:
| Q |
107 |
attagttaccttctacaaattgctattatcaagagaaagacaaactcat |
155 |
Q |
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| T |
28407776 |
attagttaccttctacaaattactattatcaagataaacacaaactcat |
28407824 |
T |
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