View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_23 (Length: 261)
Name: NF9527_low_23
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 48303498 - 48303298
Alignment:
| Q |
35 |
cctcccataatcttccaaccacgctaataaataccccgcattctccatgaagcacgcataacgaaaatatcatcaaacgaaacgtgcaacaaacataaaa |
134 |
Q |
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| T |
48303498 |
cctcccataatcttccaaccacgctaataaataccccgcattctccacgaagcacgcataacgaaaata--atcat-------------caaacataaaa |
48303414 |
T |
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| Q |
135 |
tctctaccaaaacaacaacaacaatggatttcaggttgatgggtttggattcaccactcttcaacaccctccaccacataatggacctcacagacgacac |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48303413 |
tctctaccaaaacaacaacaacaatggatttcaggttgatgggtttggattcaccactcttcaacaccatccaccacataatggacctcacagacgacac |
48303314 |
T |
|
| Q |
235 |
aacagagaataatcta |
250 |
Q |
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||||||||| |||||| |
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| T |
48303313 |
aacagagaagaatcta |
48303298 |
T |
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