View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_26 (Length: 255)
Name: NF9527_low_26
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 4762997 - 4762848
Alignment:
| Q |
93 |
cctacacatcctaccaactttcccaaaccacatcctcaccaccctccaaaagaagataacactcatttctaaagtatgaaatgagagttatgaaatgtat |
192 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4762997 |
cctatacatcctaccaacttacccaaaccacatcctcaccaccctccaaaagaagataacaatcatttctaaagtatgaaatgagagttatgaaatgtat |
4762898 |
T |
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| Q |
193 |
atgtactgaataagtggtcttagttaccgagctgtttgttttctatagta |
242 |
Q |
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| T |
4762897 |
atgtactgaataagtggtcctagttaccaagctgtttgttttctatagta |
4762848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 4638586 - 4638445
Alignment:
| Q |
101 |
tcctaccaactttcccaaaccacatcctcaccaccctccaaaagaagataacactcatttctaaagtatgaaatgagagttatgaaatgtatatgtactg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4638586 |
tcctaccaacttacccaaaccacatcctcaccaccctccaaaagaagataacactcatttctaaactatgaaatgagagttatgaaatgtatatgtactg |
4638487 |
T |
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| Q |
201 |
aataagtggtcttagttaccgagctgtttgttttctatagta |
242 |
Q |
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| T |
4638486 |
aataagtggtcctagttaccaagctgtttgttttctatagta |
4638445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 4177099 - 4177215
Alignment:
| Q |
123 |
catcctcaccaccctccaaaagaagataacactcatttctaaagtatgaaatgagagttatgaaatgtatatgtactgaataagtggtcttagttaccga |
222 |
Q |
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| T |
4177099 |
catcctcaccaccctccaaaagaagataacactcatttctaaagtatgaaatgagagttatgaaatatatatgtactgaataagtggttctagttaccaa |
4177198 |
T |
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| Q |
223 |
gctgtttgttttctata |
239 |
Q |
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| T |
4177199 |
gctgtttgttttctata |
4177215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 123 - 242
Target Start/End: Original strand, 4180925 - 4181046
Alignment:
| Q |
123 |
catcctcaccaccctccaaaagaagataacactcatttctaaagtatgaaatgagagttatgaa--atgtatatgtactgaataagtggtcttagttacc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||| |||||||| |
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| T |
4180925 |
catcctcaccaccctccaaaagaagataacactcatttctaaagtatgaaatgagagttttgaactatatatatgtactgaataggtggtcctagttacc |
4181024 |
T |
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| Q |
221 |
gagctgtttgttttctatagta |
242 |
Q |
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||||||||||||||||||||| |
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| T |
4181025 |
aagctgtttgttttctatagta |
4181046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 4808939 - 4808896
Alignment:
| Q |
199 |
tgaataagtggtcttagttaccgagctgtttgttttctatagta |
242 |
Q |
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||||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
4808939 |
tgaataattggtcttagttacggagctgtttgttttctgtagta |
4808896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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