View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9527_low_29 (Length: 250)

Name: NF9527_low_29
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9527_low_29
NF9527_low_29
[»] chr8 (1 HSPs)
chr8 (1-237)||(15348671-15348907)
[»] chr5 (2 HSPs)
chr5 (55-132)||(29696075-29696152)
chr5 (56-134)||(29687975-29688053)
[»] chr4 (15 HSPs)
chr4 (41-132)||(48875695-48875786)
chr4 (41-147)||(48870391-48870497)
chr4 (41-147)||(48886077-48886183)
chr4 (108-228)||(48147756-48147876)
chr4 (46-148)||(50250909-50251011)
chr4 (59-156)||(48891279-48891376)
chr4 (35-121)||(45372215-45372301)
chr4 (99-228)||(48705398-48705527)
chr4 (59-148)||(48852530-48852619)
chr4 (180-228)||(48735421-48735469)
chr4 (49-132)||(37827129-37827212)
chr4 (37-83)||(45366402-45366448)
chr4 (176-230)||(48898694-48898748)
chr4 (91-228)||(45384907-45385044)
chr4 (56-132)||(48902802-48902878)
[»] chr3 (2 HSPs)
chr3 (46-236)||(47451938-47452128)
chr3 (46-118)||(11015668-11015740)
[»] chr6 (1 HSPs)
chr6 (58-153)||(21015672-21015767)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15348671 - 15348907
Alignment:
Q  1 cttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  15348671 cttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattaaaggttcatgtagaggctttgtacttttgaactattattcaatcct 15348770  T
Q  101 ctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348771 ctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgac 15348870  T
Q  201 caattaaaagatgattacttggtggttttaacgtcct 237  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15348871 caattaaaagatgattacttggtggttttaatgtcct 15348907  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 29696075 - 29696152
Alignment:
Q  55 aaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 132  Q
    ||||||| |||||||||||| |||||||||||| ||| |||| ||||| | |||||||||||||||||||||||||||    
T  29696075 aaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcaca 29696152  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 29687975 - 29688053
Alignment:
Q  56 aggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacaga 134  Q
    ||||||||||||||| ||| ||||||    |  |||||||| ||| |||||||||||||||||||||||| ||||||||    
T  29687975 aggttcatgtagaggttttatactttgctccggttattcaagcctttatctatggaatccatccaccggagttcacaga 29688053  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 48875695 - 48875786
Alignment:
Q  41 tgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 132  Q
    ||||||||||||| ||||||| || ||||||||| |||| ||| | | || ||||| |||||| ||||||||||||||||||||||||||||    
T  48875695 tgattttgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcaca 48875786  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 48870391 - 48870497
Alignment:
Q  41 tgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagta 140  Q
    ||||||||||||| |||||||||||||||||||| || | ||| | | |  | ||| |||||| |||||||||||||||||||||||||||| | || ||    
T  48870391 tgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaata 48870490  T
Q  141 cctttgt 147  Q
    |||||||    
T  48870491 cctttgt 48870497  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 48886077 - 48886183
Alignment:
Q  41 tgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagta 140  Q
    ||||||||||||| |||||||||||||||||||| || | ||| | | |  | ||| |||||| |||||||||||||||||||||||||||| | || ||    
T  48886077 tgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaata 48886176  T
Q  141 cctttgt 147  Q
    |||||||    
T  48886177 cctttgt 48886183  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 48147876 - 48147756
Alignment:
Q  108 tggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaa 207  Q
    ||||||||||||||||||  | |||  ||| |||||||||| ||| ||||||  || ||||| || | ||||| |||| |||| ||||||||||| ||||    
T  48147876 tggaatccatccaccggagctaacaagaaaatacctttgtctccttttggttccaatttagatgcagcatattactatggttttgggtatgaccagttaa 48147777  T
Q  208 aagatgattacttggtggttt 228  Q
     ||||||||||||||||||||    
T  48147776 cagatgattacttggtggttt 48147756  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 50251011 - 50250909
Alignment:
Q  46 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtaccttt 145  Q
    |||||||| |||||||||||||||| ||| || ||||  ||| || ||||| |||||| ||||||||||||||||||||  |||||| | || |||||||    
T  50251011 ttgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaataccttt 50250912  T
Q  146 gtc 148  Q
    |||    
T  50250911 gtc 50250909  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 48891279 - 48891376
Alignment:
Q  59 ttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattg 156  Q
    |||||||||||| |||||||||||| |   | | |||||| ||||| |||||||||||||||| ||| |||||| | || |||||||||| |||||||    
T  48891279 ttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctcctattg 48891376  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 45372301 - 45372215
Alignment:
Q  35 tcattctgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccac 121  Q
    ||||| |||| |||||||| |||||||||||||||| ||| || ||||| |   | |||||| | ||||||||||||||||||||||    
T  45372301 tcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccac 45372215  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 48705527 - 48705398
Alignment:
Q  99 ctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatg 198  Q
    ||||| || ||||||||||| || |||||||||| | || |||||||||| ||| ||||||   | ||||| || ||||||||| || |||| || ||||    
T  48705527 ctctacctgtggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttccgatttagatgcagaatatttccatggttttggatatg 48705428  T
Q  199 accaattaaaagatgattacttggtggttt 228  Q
    | || | || ||||||||||||||| ||||    
T  48705427 atcagtcaacagatgattacttggttgttt 48705398  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 48852530 - 48852619
Alignment:
Q  59 ttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtc 148  Q
    |||||||||||||||| || ||||| ||  || |||| |  | |||||||||||||||||||||||| |||||| | || ||||||||||    
T  48852530 ttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctttgtc 48852619  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 48735469 - 48735421
Alignment:
Q  180 ttctatagtttcgggtatgaccaattaaaagatgattacttggtggttt 228  Q
    |||||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggttt 48735421  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 37827212 - 37827129
Alignment:
Q  49 aaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 132  Q
    ||||| |||||||| ||||||| |||||| ||||| ||  || || |||| ||||  |||||||||||||||| ||||||||||    
T  37827212 aaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcaca 37827129  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 45366448 - 45366402
Alignment:
Q  37 attctgattttgaaattgaaggttcatgtagaggctttgtacttttg 83  Q
    |||||||| || ||||| |||||||||||||||||||| ||||||||    
T  45366448 attctgatcttcaaattaaaggttcatgtagaggctttatacttttg 45366402  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 48898694 - 48898748
Alignment:
Q  176 atatttctatagtttcgggtatgaccaattaaaagatgattacttggtggtttta 230  Q
    |||||||||| |||| |||||||| || |||| |||||||||||| |||||||||    
T  48898694 atatttctatggttttgggtatgatcagttaacagatgattacttagtggtttta 48898748  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 45385044 - 45384907
Alignment:
Q  91 attcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagttt 190  Q
    |||||| ||| |||||||||||||||| ||   || |||||| | || |||||||||| ||| ||||||  || |||||  | || ||||||||| ||||    
T  45385044 attcaagcctttatctatggaatccattcattagagttcacaaagaaatacctttgtctccttttggttctaatttagatacagattatttctatggttt 45384945  T
Q  191 cgggtatgaccaattaaaagatgattacttggtggttt 228  Q
     |||||||| || | || | ||||||| ||||||||||    
T  45384944 tgggtatgatcagtcaacaaatgattatttggtggttt 45384907  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 48902802 - 48902878
Alignment:
Q  56 aggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 132  Q
    ||||||||| ||||| |||||||||||| ||| || ||  | | ||||| |||||||||| ||||| ||||||||||    
T  48902802 aggttcatgcagagggtttgtacttttgcactgttctttcaccatctatttatggaatccttccactggatttcaca 48902878  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 236
Target Start/End: Complemental strand, 47452128 - 47451938
Alignment:
Q  46 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtaccttt 145  Q
    |||||||| |||||||||||||||| ||| ||||||| |  | || ||||||| ||||  |||||||||||||||| ||| |||||| | || |||||||    
T  47452128 ttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaataccttt 47452029  T
Q  146 gtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaacgtcc 236  Q
    | | ||| ||||||  ||  |||| ||  | ||||| ||| | || ||||||||| | |||| |||||||||||| |||||||||| ||||    
T  47452028 gcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagttaacagatgattacttagtggttttaatgtcc 47451938  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 11015740 - 11015668
Alignment:
Q  46 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatc 118  Q
    |||||||| || ||||||||||||| ||| || ||||||  | || ||||||| |||| ||||||||||||||    
T  11015740 ttgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatc 11015668  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 21015672 - 21015767
Alignment:
Q  58 gttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtccccta 153  Q
    ||||||||||||| ||| || ||||| || || |||||||| |||| |||||||||||||||||  || |||||| | || |||||||||| ||||    
T  21015672 gttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 21015767  T

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