View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9527_low_3 (Length: 753)

Name: NF9527_low_3
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9527_low_3
NF9527_low_3
[»] chr1 (12 HSPs)
chr1 (18-508)||(26837814-26838315)
chr1 (561-742)||(26837636-26837817)
chr1 (585-636)||(30847720-30847771)
chr1 (583-623)||(42004960-42005000)
chr1 (575-642)||(7918205-7918272)
chr1 (585-640)||(34712379-34712434)
chr1 (572-633)||(10380784-10380843)
chr1 (584-618)||(23440017-23440051)
chr1 (585-619)||(46348400-46348434)
chr1 (583-636)||(373053-373106)
chr1 (585-638)||(23804436-23804489)
chr1 (583-623)||(48415738-48415779)
[»] chr4 (8 HSPs)
chr4 (572-640)||(18513237-18513305)
chr4 (580-633)||(44081580-44081633)
chr4 (586-623)||(49659536-49659573)
chr4 (583-623)||(3144665-3144705)
chr4 (583-619)||(16303283-16303319)
chr4 (584-620)||(50848319-50848355)
chr4 (585-619)||(37203272-37203306)
chr4 (586-619)||(6273953-6273986)
[»] chr3 (5 HSPs)
chr3 (583-623)||(15864839-15864879)
chr3 (582-634)||(40150573-40150625)
chr3 (583-634)||(20691325-20691376)
chr3 (577-623)||(25074789-25074835)
chr3 (585-634)||(49505156-49505205)
[»] chr7 (9 HSPs)
chr7 (583-623)||(23751906-23751946)
chr7 (584-623)||(29812677-29812716)
chr7 (584-622)||(46644701-46644739)
chr7 (583-623)||(4017807-4017847)
chr7 (584-640)||(15902829-15902885)
chr7 (575-639)||(23128658-23128722)
chr7 (585-619)||(11831440-11831474)
chr7 (586-623)||(13427585-13427622)
chr7 (576-625)||(38134417-38134466)
[»] chr6 (12 HSPs)
chr6 (583-623)||(6389749-6389789)
chr6 (585-625)||(10842540-10842580)
chr6 (583-619)||(17168480-17168516)
chr6 (583-623)||(19602194-19602234)
chr6 (577-639)||(28862121-28862184)
chr6 (585-619)||(7938124-7938158)
chr6 (585-639)||(9195751-9195805)
chr6 (585-646)||(7086803-7086864)
chr6 (587-640)||(9024172-9024225)
chr6 (587-636)||(13364705-13364754)
chr6 (582-619)||(18252768-18252805)
chr6 (585-634)||(26178683-26178732)
[»] chr5 (8 HSPs)
chr5 (577-625)||(2577191-2577239)
chr5 (575-622)||(4344740-4344787)
chr5 (572-623)||(39696012-39696063)
chr5 (584-623)||(43554528-43554567)
chr5 (572-634)||(12927649-12927711)
chr5 (584-625)||(16881143-16881184)
chr5 (575-634)||(32630737-32630796)
chr5 (577-640)||(38749559-38749622)
[»] chr2 (10 HSPs)
chr2 (583-623)||(23354665-23354705)
chr2 (577-623)||(24011036-24011082)
chr2 (582-634)||(18570977-18571029)
chr2 (583-623)||(23355008-23355048)
chr2 (583-623)||(37986785-37986825)
chr2 (584-623)||(25544488-25544527)
chr2 (577-623)||(10535772-10535818)
chr2 (585-619)||(20539691-20539725)
chr2 (585-619)||(30335425-30335459)
chr2 (589-634)||(2423881-2423926)
[»] chr8 (5 HSPs)
chr8 (584-623)||(39820436-39820475)
chr8 (585-625)||(12559117-12559157)
chr8 (584-623)||(13845241-13845280)
chr8 (577-619)||(20873069-20873111)
chr8 (578-623)||(8017487-8017532)
[»] scaffold0049 (1 HSPs)
scaffold0049 (587-640)||(56932-56985)
[»] scaffold0037 (1 HSPs)
scaffold0037 (578-619)||(102906-102947)


Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 26838315 - 26837814
Alignment:
Q  18 ataactgataaccataattttgaatgcgaatcttgaggtagcaatgtctactgatagatttaaccaaagtcaataatgattcaaacaaggcaacaattca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  26838315 ataactgataaccataattttgaatgcgaatcttgaggtagcaatgtctaccgatagatttaaccaaagtcaataatgattcaaacaaggcaacaattta 26838216  T
Q  118 ctatggagtataagataataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtg 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838215 ctatggagtataagacaataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtg 26838116  T
Q  218 catttttagtatcatgttttataaattatgggnnnnnnntagaaa----gatcattcttatttttgctaaacaatcggtacaagttagttcttgaaaaga 313  Q
    ||||||||||||||||||||||||||||||||       ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838115 catttttagtatcatgttttataaattatgggaaaaaaatagaaagatcgatcattcttatttttgctaaacaatcggtacaagttagttcttgaaaaga 26838016  T
Q  314 agagaagacgacgacatgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838015 agagaagacgacgacatgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaa 26837916  T
Q  414 aatacacacgctttgcaaagtaccaaccacatatc-------nnnnnnngagagaagagaaacaaaaatgatgtcgaacaccgaacacaaacatatgaac 506  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26837915 aatacacacgctttgcaaagtaccaaccacatatcttttttttttttttgagagaagagaaacaaaaatgatgtcgaacaccgaacacaaacatatgaac 26837816  T
Q  507 aa 508  Q
    ||    
T  26837815 aa 26837814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 561 - 742
Target Start/End: Complemental strand, 26837817 - 26837636
Alignment:
Q  561 acaatatatgaacactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtcaaacaccaacacatatctgg 660  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  26837817 acaacatatgaacactgacatcaataataatttgaaaaaataatataatttagtgtaattatatgagtcagtgttgtgtcaaacaccaacgcatgtctgg 26837718  T
Q  661 caccaagacccacataattcaaggagggtatgatacaagtggtaaatattatataagctgtggtcattacttattagtatta 742  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26837717 caccaagacccacataattcaaggagtgtatgatacaagtggtaaatattatataagctgtggtcgttactcattagtatta 26837636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 636
Target Start/End: Complemental strand, 30847771 - 30847720
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttg 636  Q
    ||||||||||||||||||| |||||| | |||||||||||| ||||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttg 30847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 42005000 - 42004960
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  42005000 gataataatttgagaaaatgacataatttagtgtaatcata 42004960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 642
Target Start/End: Complemental strand, 7918272 - 7918205
Alignment:
Q  575 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtcaa 642  Q
    ||||||||  ||||||||||| ||||| | |||||| |||||||| ||||| |||||||| |||||||    
T  7918272 ctgacatcactaataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcaa 7918205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 640
Target Start/End: Complemental strand, 34712434 - 34712379
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 640  Q
    ||||||||||| ||||| | ||||||||||||||| ||||| |||||||| |||||    
T  34712434 taataatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtc 34712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 633
Target Start/End: Original strand, 10380784 - 10380843
Alignment:
Q  572 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtg 633  Q
    ||||||||||| |||||||||||| || |  ||||||||||||||||||||| | |||||||    
T  10380784 acactgacatcaataataatttgagaata--atataatttagtgtaatcataggtgtcagtg 10380843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 618
Target Start/End: Original strand, 23440017 - 23440051
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaa 618  Q
    |||||||||||| ||||||||||||||||||||||    
T  23440017 ataataatttgagaaaatgatataatttagtgtaa 23440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 619
Target Start/End: Complemental strand, 46348434 - 46348400
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||||||||||||| |||||||||||||||||    
T  46348434 taataatttgaaaaaatcatataatttagtgtaat 46348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 636
Target Start/End: Original strand, 373053 - 373106
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttg 636  Q
    ||||||||||||| ||||||| || ||||||| |||||||||| ||| ||||||    
T  373053 gataataatttgagaaaatgacatgatttagtttaatcatatgtgtcggtgttg 373106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 638
Target Start/End: Original strand, 23804436 - 23804489
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtg 638  Q
    ||||||||||| ||||| |||||||||| |||||| ||||| |||| |||||||    
T  23804436 taataatttgataaaattatataatttaatgtaattatatgtgtcattgttgtg 23804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 48415779 - 48415738
Alignment:
Q  583 gataataatttgaaaaaa-tgatataatttagtgtaatcata 623  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  48415779 gataataattttaaaaaaatgatataatttagtgtaatcata 48415738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 572 - 640
Target Start/End: Complemental strand, 18513305 - 18513237
Alignment:
Q  572 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 640  Q
    |||| |||| |||||||||||||| ||||||| |||||| | |||||||||||| ||||||||||||||    
T  18513305 acacagacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtc 18513237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 633
Target Start/End: Complemental strand, 44081633 - 44081580
Alignment:
Q  580 atcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtg 633  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||| |||||||    
T  44081633 atcgttaataatttgaaaaaatcatataatttaatgtaattatatgtgtcagtg 44081580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 623
Target Start/End: Complemental strand, 49659573 - 49659536
Alignment:
Q  586 aataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||| |||||||||||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcata 49659536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 3144705 - 3144665
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  3144705 gataataatttcagaaaatgatataatttagtgtaatcata 3144665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 619
Target Start/End: Complemental strand, 16303319 - 16303283
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16303319 gataatattttgaaaaaatgatataatttagtgtaat 16303283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 620
Target Start/End: Complemental strand, 50848355 - 50848319
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatc 620  Q
    ||||||||||||||||||||||||||| |||||||||    
T  50848355 ataataatttgaaaaaatgatataattcagtgtaatc 50848319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 619
Target Start/End: Original strand, 37203272 - 37203306
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||||||||||||||| |||||||||||||||    
T  37203272 taataatttgaaaaaatgacataatttagtgtaat 37203306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 619
Target Start/End: Original strand, 6273953 - 6273986
Alignment:
Q  586 aataatttgaaaaaatgatataatttagtgtaat 619  Q
    |||||||||| |||||||||||||||||||||||    
T  6273953 aataatttgagaaaatgatataatttagtgtaat 6273986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 15864839 - 15864879
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15864839 gataataatttgaaaaaatgatataatttagtgtaatcata 15864879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 634
Target Start/End: Complemental strand, 40150625 - 40150573
Alignment:
Q  582 cgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    |||||||||||||| |||||||||||||| | |||||||||||| ||| ||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgt 40150573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 634
Target Start/End: Original strand, 20691325 - 20691376
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| ||| ||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgt 20691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 623
Target Start/End: Original strand, 25074789 - 25074835
Alignment:
Q  577 gacatcgataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||| |||||||||||||| ||||||| |||||| ||||||||||||    
T  25074789 gacaccgataataatttgagaaaatgacataattgagtgtaatcata 25074835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 634
Target Start/End: Complemental strand, 49505205 - 49505156
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    ||||||||||| ||||| | ||||||||||||||| ||||| ||||||||    
T  49505205 taataatttgagaaaatcacataatttagtgtaattatatgtgtcagtgt 49505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 23751906 - 23751946
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23751906 gataataatttgataaaatgatataatttagtgtaatcata 23751946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 623
Target Start/End: Complemental strand, 29812716 - 29812677
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcata 29812677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 622
Target Start/End: Complemental strand, 46644739 - 46644701
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcat 622  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  46644739 ataataatttgaaaaaattatataatttagtgtaatcat 46644701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 4017847 - 4017807
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  4017847 gataataatttgagaaaacgatataatttagtgtaatcata 4017807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 640
Target Start/End: Original strand, 15902829 - 15902885
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 640  Q
    |||||||||||| ||||| | ||||||||||||||| ||||| ||| ||||||||||    
T  15902829 ataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtc 15902885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 23128722 - 23128658
Alignment:
Q  575 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgt 639  Q
    |||||| | |||||||||||| ||||  |||||||| |||||||||||||| ||| |||||||||    
T  23128722 ctgacaccaataataatttgagaaaaccatataattcagtgtaatcatatgtgtcggtgttgtgt 23128658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 619
Target Start/End: Original strand, 11831440 - 11831474
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||||||||||||| |||||||||||||||||    
T  11831440 taataatttgaaaaaatcatataatttagtgtaat 11831474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 623
Target Start/End: Original strand, 13427585 - 13427622
Alignment:
Q  586 aataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  13427585 aataatttgaaaaaatgacataatttagtataatcata 13427622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 625
Target Start/End: Complemental strand, 38134466 - 38134417
Alignment:
Q  576 tgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatg 625  Q
    ||||| |||||||||||||| ||||||| |||||| | ||||||||||||    
T  38134466 tgacaccgataataatttgagaaaatgacataattcaatgtaatcatatg 38134417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 6389749 - 6389789
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  6389749 gataataatttgagaaaatgatataatttagtgtaatcata 6389789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 625
Target Start/End: Original strand, 10842540 - 10842580
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatg 625  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  10842540 taataatttgaaaaaatcacataatttagtgtaatcatatg 10842580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 619
Target Start/End: Complemental strand, 17168516 - 17168480
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||||||||| |||||||||||||||||||||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaat 17168480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 19602234 - 19602194
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcata 19602194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 639
Target Start/End: Original strand, 28862121 - 28862184
Alignment:
Q  577 gacatcgataataatttgaaaaaatgata-taatttagtgtaatcatatgagtcagtgttgtgt 639  Q
    ||||||||||||||||||| ||||||| | ||||| |||||||||||||| ||| |||| ||||    
T  28862121 gacatcgataataatttgataaaatgacattaattcagtgtaatcatatgtgtcggtgtcgtgt 28862184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 619
Target Start/End: Original strand, 7938124 - 7938158
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||||||||||||| |||||||||||||||||    
T  7938124 taataatttgaaaaaatcatataatttagtgtaat 7938158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 639
Target Start/End: Complemental strand, 9195805 - 9195751
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgt 639  Q
    ||||||||||| ||||||| ||||||||||||||| ||||| ||| |||| ||||    
T  9195805 taataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgt 9195751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 646
Target Start/End: Original strand, 7086803 - 7086864
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtcaaacac 646  Q
    ||||||||||| ||||| | ||||||||||||||| ||||| ||| |||| |||||| ||||    
T  7086803 taataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtcagacac 7086864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 9024225 - 9024172
Alignment:
Q  587 ataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 640  Q
    ||||||||| ||||||| |||||| | |||||||||||| |||||||| |||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtc 9024172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 636
Target Start/End: Complemental strand, 13364754 - 13364705
Alignment:
Q  587 ataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttg 636  Q
    ||||||||| ||||| |||||||| |||||||||||||| ||| ||||||    
T  13364754 ataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttg 13364705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 619
Target Start/End: Complemental strand, 18252805 - 18252768
Alignment:
Q  582 cgataataatttgaaaaaatgatataatttagtgtaat 619  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  18252805 cgataataatttaaaaaaatgacataatttagtgtaat 18252768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 634
Target Start/End: Complemental strand, 26178732 - 26178683
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    ||||||||||| ||||| | ||||||||||||||||||||| ||| ||||    
T  26178732 taataatttgataaaatcacataatttagtgtaatcatatgtgtcggtgt 26178683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 625
Target Start/End: Complemental strand, 2577239 - 2577191
Alignment:
Q  577 gacatcgataataatttgaaaaaatgatataatttagtgtaatcatatg 625  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  2577239 gacaccgataataatttgagaaaatgacataatttagtgtaatcatatg 2577191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 575 - 622
Target Start/End: Original strand, 4344740 - 4344787
Alignment:
Q  575 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcat 622  Q
    |||||| |||||||||||||||||||||| |||||| |||||||||||    
T  4344740 ctgacaccgataataatttgaaaaaatgacataattcagtgtaatcat 4344787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 39696063 - 39696012
Alignment:
Q  572 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||| |||| ||| |||||||||| |||||||||||||||||||||||||||    
T  39696063 acaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcata 39696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 623
Target Start/End: Original strand, 43554528 - 43554567
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcata 43554567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 634
Target Start/End: Original strand, 12927649 - 12927711
Alignment:
Q  572 acactgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    |||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||||  ||||||||    
T  12927649 acaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgtcagtgt 12927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 625
Target Start/End: Original strand, 16881143 - 16881184
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcatatg 625  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  16881143 ataataatttgaaaaaatgacataatttaatgtaatcatatg 16881184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 634
Target Start/End: Complemental strand, 32630796 - 32630737
Alignment:
Q  575 ctgacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    |||||| |||||||||||||| ||||| |||||||| | |||||| ||||| ||||||||    
T  32630796 ctgacaccgataataatttgagaaaattatataattcaatgtaattatatgtgtcagtgt 32630737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 640
Target Start/End: Complemental strand, 38749622 - 38749559
Alignment:
Q  577 gacatcgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 640  Q
    |||| |||||||||||||||||||||| |||||| | |||||| ||||| ||  ||||||||||    
T  38749622 gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtc 38749559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 23354705 - 23354665
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcata 23354665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 623
Target Start/End: Original strand, 24011036 - 24011082
Alignment:
Q  577 gacatcgataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  24011036 gacattgataataatttgagaaaatgacataatttagtgtaatcata 24011082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 18570977 - 18571029
Alignment:
Q  582 cgataataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    |||||||||||||| ||||||| |||||| | |||||||||||| ||||||||    
T  18570977 cgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 23355048 - 23355008
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  23355048 gataataatttgagaaaatgatataatttagtgcaatcata 23355008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 37986785 - 37986825
Alignment:
Q  583 gataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  37986785 gataataatttgaaaaaatgatatatttgagtgtaatcata 37986825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 623
Target Start/End: Original strand, 25544488 - 25544527
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcata 25544527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 623
Target Start/End: Complemental strand, 10535818 - 10535772
Alignment:
Q  577 gacatcgataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||| |||||||||||||| ||||||| |||||| ||||||||||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaatcata 10535772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 619
Target Start/End: Complemental strand, 20539725 - 20539691
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||||||||||||| |||||||||||||||||    
T  20539725 taataatttgaaaaaatcatataatttagtgtaat 20539691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 619
Target Start/End: Original strand, 30335425 - 30335459
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||||||||||||||||| |||||||||||||||    
T  30335425 taataatttgaaaaaatgacataatttagtgtaat 30335459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 634
Target Start/End: Original strand, 2423881 - 2423926
Alignment:
Q  589 aatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgt 634  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  2423881 aatttgagaaaatcatataatttagtataattatatgagtcagtgt 2423926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 623
Target Start/End: Original strand, 39820436 - 39820475
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcata 39820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 625
Target Start/End: Complemental strand, 12559157 - 12559117
Alignment:
Q  585 taataatttgaaaaaatgatataatttagtgtaatcatatg 625  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  12559157 taataatttgagaaaatgatataattcagtgtaatcatatg 12559117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 623
Target Start/End: Original strand, 13845241 - 13845280
Alignment:
Q  584 ataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcata 13845280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 619
Target Start/End: Original strand, 20873069 - 20873111
Alignment:
Q  577 gacatcgataataatttgaaaaaatgatataatttagtgtaat 619  Q
    ||||| ||||||||||||||||||| | |||||||||||||||    
T  20873069 gacatagataataatttgaaaaaatcacataatttagtgtaat 20873111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 623
Target Start/End: Original strand, 8017487 - 8017532
Alignment:
Q  578 acatcgataataatttgaaaaaatgatataatttagtgtaatcata 623  Q
    |||| ||||||||| ||||||||||| |||||| ||||||||||||    
T  8017487 acatagataataatatgaaaaaatgacataattgagtgtaatcata 8017532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 56932 - 56985
Alignment:
Q  587 ataatttgaaaaaatgatataatttagtgtaatcatatgagtcagtgttgtgtc 640  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||| |||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgtcagtgtcgtgtc 56985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 619
Target Start/End: Original strand, 102906 - 102947
Alignment:
Q  578 acatcgataataatttgaaaaaatgatataatttagtgtaat 619  Q
    |||||||||||||||||| |||||||||||||| | ||||||    
T  102906 acatcgataataatttgagaaaatgatataattcaatgtaat 102947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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