View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_34 (Length: 232)
Name: NF9527_low_34
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 4940583 - 4940384
Alignment:
| Q |
17 |
cataggttatggtagagggaaaagtctataattaggttaatgtttttaggcagataatacaaaattagtggctgtatctatcttcaaagttgataccatt |
116 |
Q |
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| T |
4940583 |
cataggttatggtagagggaaaagtctatgattaggttaatgtttgtaggcagataatacaaaattagtggctgtatctatcttcaaagttgataccatt |
4940484 |
T |
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| Q |
117 |
tgttcctggtaccacttttaatcaaacaaagtccatttatgatttttgaacttttttgtaataaataactaaacccatatcaatacgcaattgaaattaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4940483 |
tgttcctggtaccacttttaatcaaacaaagtccatttatgatttttgaacttttttgtaataaataactaaacccatatcaatacgcaattgaaattaa |
4940384 |
T |
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