View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9527_low_36 (Length: 226)
Name: NF9527_low_36
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 50087633 - 50087424
Alignment:
| Q |
1 |
agcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087633 |
agcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagtt |
50087534 |
T |
|
| Q |
101 |
ggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087533 |
ggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaat |
50087434 |
T |
|
| Q |
201 |
tactttttct |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
50087433 |
tactttttct |
50087424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 23271894 - 23271684
Alignment:
| Q |
1 |
agcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagtt |
100 |
Q |
| |
|
||||||||| ||||| | || ||||||||||| || ||||||||||| |||||||| || || ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23271894 |
agcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaagtt |
23271795 |
T |
|
| Q |
101 |
ggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaat |
200 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||| |||||| | ||||||||||||||||| || |||||||||||| |||| ||||||||||||| |
|
|
| T |
23271794 |
ggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaacaat |
23271695 |
T |
|
| Q |
201 |
tactttttctt |
211 |
Q |
| |
|
|||| |||||| |
|
|
| T |
23271694 |
tactctttctt |
23271684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 33446775 - 33446628
Alignment:
| Q |
65 |
tgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttc-aaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataaca |
163 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||| ||| | | ||||||||||||| | ||| |||||| | ||||||||||||| | |
|
|
| T |
33446775 |
tgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggcaatagtaggagaagcattgaaatcaaatataata |
33446676 |
T |
|
| Q |
164 |
acaatgggtcctcttgttttaccagcttcagaacaattactttttctt |
211 |
Q |
| |
|
|| || || | ||||||| | || | |||| ||||||| || |||||| |
|
|
| T |
33446675 |
actattggccatcttgttcttccggtttcaaaacaattgctctttctt |
33446628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 26453081 - 26453149
Alignment:
| Q |
17 |
gttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagac |
85 |
Q |
| |
|
||||||||||| || || |||||||| | |||||||||||||| ||| ||||||| | ||||| ||||| |
|
|
| T |
26453081 |
gttcatgttgtgaggactcataaaggtgctgatgataaagcatttaagtgtgtttatcaagaacaagac |
26453149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University