View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_4 (Length: 637)
Name: NF9527_low_4
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 16 - 634
Target Start/End: Original strand, 37558279 - 37558897
Alignment:
| Q |
16 |
tatggaaaggtcaaaaccaaagattccattggagattcttcttgaagcaacaaaaccagtgaagccgtatccatggtctgaagtaacggatatgagtgtt |
115 |
Q |
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| T |
37558279 |
tatggaaaggtcaaaaccaaagattccattggaggttcttcttgaagcaacaaaaccagtgaagccgtatccatggtctgaagtaacggatatgagtgtt |
37558378 |
T |
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| Q |
116 |
agtgaagctactggatttttctttgatttactagcaataatcctgagtgtgtttaggaaaaaccgaaactgaaatcgtgaatgaaaaggaaatgattgat |
215 |
Q |
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| T |
37558379 |
agtgaagctactggatttttctttgatttactagcaataatcctgagtgtgtttaggaaaaaccgaaactgaaatcgtgaatgaaaaggaaatgattgat |
37558478 |
T |
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| Q |
216 |
caataataaaatgggaaaggaaatgccttcagatatctacttcctttgtgttatgaactaggatttcgaactcagcaatgtttgatcactttgctgcaaa |
315 |
Q |
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| T |
37558479 |
caataataaaatgggaaaggaaatgccttcagatatctacttcctttgtgttatgaactaggatttcaaactcagcaatgtttgatcactttgctgcaaa |
37558578 |
T |
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| Q |
316 |
aaatatataatcaaaccttccgaagccatgtcaaatttaaggcctgtaaaataatcttactatagcaataataagaacatgtaagttttaaaattggacc |
415 |
Q |
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| T |
37558579 |
aaatatataatcaaaccttccgaagccatgtcaaatttaaggcctgtaaaataatcttactatagcaataataagaacatgtaagttttaaaattggacc |
37558678 |
T |
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| Q |
416 |
caataagaataatgctattgccaataaccatttgcgaattatcatctcacaaaatcaaaatctcttgtatcagccaacaatagaaaatctgcatacaatc |
515 |
Q |
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| T |
37558679 |
cgataagaataatgctattgccaataaccatttgcgaattatcatctcacaaaatcaaaatctcttgtatcagccaacaatagaaaatctgcatacaatc |
37558778 |
T |
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| Q |
516 |
taatgaaaatttaaatcagttgtagaaagttctaccagaatatcactcgaccctatgatcatttgtgaacaatgtacagaatctctacatatcaaaagtt |
615 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558779 |
tactgaaaatttaaatcagttgtagaaagttctaccagaatatcactcgaccctatgatcatttgtgaacaatgtacagaatctctacatatcaaaagtt |
37558878 |
T |
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| Q |
616 |
caagccttagctctctgct |
634 |
Q |
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| T |
37558879 |
caagccttagctccctgct |
37558897 |
T |
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