View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_41 (Length: 217)
Name: NF9527_low_41
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 24978184 - 24978011
Alignment:
| Q |
26 |
accaaacaatggaaaaattcagaaagctaatagttgtaagcattgctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtg |
125 |
Q |
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| T |
24978184 |
accaaacaatggaaaaattcagaaagctaatagttgtaagcattgctcagaggcaggcaagaaaattgtccatattcttagtaaattttggggagatgtg |
24978085 |
T |
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| Q |
126 |
gtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaaagatgaatatgcaccct |
199 |
Q |
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| T |
24978084 |
gtggactttgaccacacaacagatggcactttggatcctgacactattagagtgaaaagatgaatatgcaccct |
24978011 |
T |
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Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 16140725 - 16140551
Alignment:
| Q |
23 |
agaaccaaacaatggaaaaattcagaaagctaatagttgtaagcattgctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagat |
122 |
Q |
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| T |
16140725 |
agaaccaaacaaaggaaggtttcataaagctaataactctaagcattgctcagaggcaagcaagaaaagtgtccaaattcttagtaaattttggggtgat |
16140626 |
T |
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| Q |
123 |
gtggtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaaagatgaatatgcaccctatg |
202 |
Q |
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| T |
16140625 |
gtggtggactctg---acactacaaatgccactatggatcctgacac--cgacaaagaaaagatgaatatgcaccctatg |
16140551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 9057663 - 9057815
Alignment:
| Q |
42 |
attcagaaagctaatagttgtaagcattgctcagaggcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccaca |
141 |
Q |
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| T |
9057663 |
attcagaaagctaataactctaagcattgttcagaggcatgcaagaaaagtgtccaaattcttaataaatgttgaggttatgtggtggactctg---aca |
9057759 |
T |
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| Q |
142 |
caacagatggcactttggatcctgacactataacagtgaaaagatgaatatgcaccct |
199 |
Q |
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| T |
9057760 |
caacagatggcattatggatcctgacac--tgacaatgaaaagatgaatatgcaccct |
9057815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 10502268 - 10502149
Alignment:
| Q |
78 |
gcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacag |
177 |
Q |
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|||| |||||||| |||| | |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |||| |||| |||||||| | |||| |
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| T |
10502268 |
gcagccaagaaaagtgtcaaaattcttagcaaattttcgggggatgtggtggactctaaccacacaacagatgacactgtggaccctgacac--tgacag |
10502171 |
T |
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| Q |
178 |
tgaaaagatgaatatgcaccct |
199 |
Q |
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| T |
10502170 |
tgaaaagatgaatatgcaccct |
10502149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 4922567 - 4922665
Alignment:
| Q |
99 |
attcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaaagatgaatatgcaccc |
198 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| |||||| |||||| | || |||||||||||||||||||||| |
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| T |
4922567 |
attcttagtaaattttggggcgatgtggaggactctgaccacacaatagatgacactatggatcatgacac--tgacggtgaaaagatgaatatgcaccc |
4922664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 32230277 - 32230158
Alignment:
| Q |
78 |
gcagacaagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacag |
177 |
Q |
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|||| |||||||| || ||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||| |||| | |||||| | ||| |
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| T |
32230277 |
gcagccaagaaaagtgcccaaattcttagcaaattttggggggatgtggtggattctgaccacacgacagatggcactatggaccttgacac--tgacac |
32230180 |
T |
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| Q |
178 |
tgaaaagatgaatatgcaccct |
199 |
Q |
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||||| |||||||||||||||| |
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| T |
32230179 |
tgaaatgatgaatatgcaccct |
32230158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 30426421 - 30426307
Alignment:
| Q |
83 |
caagaaaattgtccatattcttagtaaattttggggagatgtggtggactctgaccacacaacagatggcactttggatcctgacactataacagtgaaa |
182 |
Q |
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|||||||| || ||| |||||||| ||||||||| | || |||||||| ||||||||||| |||||||||||| |||| | |||||| | ||| ||||| |
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| T |
30426421 |
caagaaaagtgcccaaattcttagcaaattttggagggacgtggtggattctgaccacacgacagatggcactatggaccttgacac--tgacactgaaa |
30426324 |
T |
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| Q |
183 |
agatgaatatgcaccct |
199 |
Q |
| |
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|||||||||||||||| |
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| T |
30426323 |
tgatgaatatgcaccct |
30426307 |
T |
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