View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_42 (Length: 215)
Name: NF9527_low_42
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_42 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 70579 - 70389
Alignment:
| Q |
8 |
caactaataaccaaagaagattatgtacctcaagtctgcgtgaacacttgaatataggtgaaccaggtttgggcatgaaatcaccttcttgtccaccgat |
107 |
Q |
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| T |
70579 |
caactaataaccaaagaagattat--acctcaagtctgcgcgaacacttgaatataggtgaaccaggtttgggcatgaaatcaccttcttgtccaccgat |
70482 |
T |
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| Q |
108 |
aacataaaggcgatcattgaccacaatgcaagctctttacaaaacagggtaaggttagatgaagccaaccaattcctttcaaagacaaaactc |
200 |
Q |
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| T |
70481 |
aacataaaggcgatcattgaccacaatgcaagctctatacaaaacaaggtaaggttagatgaagccaaccaattcctttcaaagacaaaactc |
70389 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 1335930 - 1335857
Alignment:
| Q |
52 |
cacttgaatataggtgaaccaggtttgggcatgaaatcaccttcttgtccaccgataacataaaggcgatcatt |
125 |
Q |
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| T |
1335930 |
cacttaaaaataggtgacccaggtttggccataaaatcaccttcttgaccaccaagaacataaagacgatcatt |
1335857 |
T |
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