View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9527_low_5 (Length: 610)
Name: NF9527_low_5
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 343 - 582
Target Start/End: Original strand, 4706340 - 4706579
Alignment:
| Q |
343 |
agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcactttctctgcggctgctcttt |
442 |
Q |
| |
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|||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4706340 |
agataaaaaaagggtacatgatatctttagtgacaaaccactgaattatgctttttctctccccctttacaatcagtcactctctctgcggctgctcttt |
4706439 |
T |
|
| Q |
443 |
ttccattcactcgacacagcctacannnnnnnctctcttaaactgatatattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaac |
542 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4706440 |
ttccattcactcgacacagcctacatttttttctctcttaaactgatctattatgcctttttcaccctattcctctcatattgaaaatgttggaaacaac |
4706539 |
T |
|
| Q |
543 |
cataataaaggttagcatagcaggaattttgattgtctta |
582 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4706540 |
tataataaaggttagcatagcagggattttgattgtctta |
4706579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 53842082 - 53841893
Alignment:
| Q |
1 |
ataataataataatccattatttgttacacatttagcttcctaatccatttacatttggttggaaatgttgttaggtaattagtcattaacgagtgggac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53842082 |
ataataatgataatccattatttgttacacatttagcttcctaatccatttacgtttggttggaaatgttgttaggtaattagtcattaacgagtgggac |
53841983 |
T |
|
| Q |
101 |
agaagttgataataactgatatctatttggagatagatgggaagttattatcaaaaacacgtttgattgtgaaatttattaaaagttaaa |
190 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53841982 |
agaagttgataataactgatatctatttggagatagatgggaagttattatcaaaaacacgtttgattgtgaaatttattaaaagttaaa |
53841893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 348 - 582
Target Start/End: Original strand, 33762039 - 33762274
Alignment:
| Q |
348 |
aaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcactttctctgcggctgctctttttcca |
447 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||||||| |
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|
| T |
33762039 |
aaaaaagggtacatgatatctttaatgacaaaccactggattatgctttttctctccccctttacggccggtcactctccctgcggctgctctttttcca |
33762138 |
T |
|
| Q |
448 |
ttcactcgacacagcctacannnnnnn-ctctcttaaactgatatattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaaccata |
546 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33762139 |
ttcacttgacacagcctacatttattttctctcttaaactgatctattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaaccata |
33762238 |
T |
|
| Q |
547 |
ataaaggttagcatagcaggaattttgattgtctta |
582 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
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|
| T |
33762239 |
ataaaggttagcatagcagggattttgattgtctta |
33762274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 53841906 - 53841816
Alignment:
| Q |
210 |
tattaaaagttaaaatcatcatacttatctctaaaaatatatttgtttaggaatttgtaggtcatacattttgctacgatgttgaaaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
53841906 |
tattaaaagttaaaatcatcatacttacctctaaaaatatatttgtttaggaatttgtaggtcatacattttgctatgatgttgaaaagta |
53841816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 343 - 582
Target Start/End: Complemental strand, 1512545 - 1512305
Alignment:
| Q |
343 |
agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcactttctctgcggctgctcttt |
442 |
Q |
| |
|
|||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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|
| T |
1512545 |
agataaaaaaaggatacataatatctttaatgacaaaccactggattatgctttttctctccccctttacagccagtcactctccctgcggctgctcttt |
1512446 |
T |
|
| Q |
443 |
ttccattcactcgacacagcctacannnnnnn-ctctcttaaactgatatattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaa |
541 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1512445 |
ttccattcactcgacacagcctacatttattttctctcttaaactgatctattaagcctctttcaccctattcctctcatattgaaaatgttggaaacaa |
1512346 |
T |
|
| Q |
542 |
ccataataaaggttagcatagcaggaattttgattgtctta |
582 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1512345 |
ccataataaaggttagcatagcagggattttgattgtctta |
1512305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 1e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 343 - 582
Target Start/End: Complemental strand, 36254188 - 36253948
Alignment:
| Q |
343 |
agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcactttctctgcggctgctcttt |
442 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||| |
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|
| T |
36254188 |
agataaaaaaagggtacatgatatctttagtgacaaaccactggattatgctttttctctccccctttatagccagtcactctccttgcggctgctcttt |
36254089 |
T |
|
| Q |
443 |
ttccattcactcgacacagcctacannnnnnn-ctctcttaaactgatatattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaa |
541 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36254088 |
ttccattcactcgacacagcctacatttattttctctcttaaactgatctattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaa |
36253989 |
T |
|
| Q |
542 |
ccataataaaggttagcatagcaggaattttgattgtctta |
582 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36253988 |
ccataataaaggttagcatagcagggattttgattgtctta |
36253948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 343 - 582
Target Start/End: Complemental strand, 21527010 - 21526770
Alignment:
| Q |
343 |
agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcactttctctgcggctgctcttt |
442 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||| |
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|
| T |
21527010 |
agataaaaaaagggtacatgatatctttagtgacaaaccactggattatgctttttctctccccctttatagccagtcactctccttgcggctgctcttt |
21526911 |
T |
|
| Q |
443 |
ttccattcactcgacacagcctaca-nnnnnnnctctcttaaactgatatattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaa |
541 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
21526910 |
ttccattcactcgacacagcctacattttttttctctcttaaactgatctattatgcctctttcacccaattcctctcgtattgaaaatgttggaaacaa |
21526811 |
T |
|
| Q |
542 |
ccataataaaggttagcatagcaggaattttgattgtctta |
582 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
21526810 |
ccataataaatgttagcatatcagggattttgattgtctta |
21526770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 477 - 592
Target Start/End: Complemental strand, 26376313 - 26376198
Alignment:
| Q |
477 |
ctcttaaactgatatattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaaccataataaaggttagcatagcaggaattttgatt |
576 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
26376313 |
ctcttaaacggatctattatgcctctttcaccctattcctctcatattgaaaatgttggaaacaaccataacaaaggttagcatagcagggattttgatt |
26376214 |
T |
|
| Q |
577 |
gtcttaccaacataat |
592 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26376213 |
gtcttaccaacataat |
26376198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 343 - 467
Target Start/End: Complemental strand, 26393383 - 26393259
Alignment:
| Q |
343 |
agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcactttctctgcggctgctcttt |
442 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||| |
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|
| T |
26393383 |
agataaaaaaagggtacatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaaccaatcactctctttgcagctgctcttt |
26393284 |
T |
|
| Q |
443 |
ttccattcactcgacacagcctaca |
467 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26393283 |
ttccattcactcgacacagcctaca |
26393259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 493 - 559
Target Start/End: Complemental strand, 29388805 - 29388739
Alignment:
| Q |
493 |
ttatgcctctttcaccctattcctctcatattgaaaatgttggaaacaaccataataaaggttagca |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
29388805 |
ttatgcctctttcaccctattcctctcatagtgaaaatgtcagaaacaatcatattaaaggttagca |
29388739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 24848285 - 24848237
Alignment:
| Q |
493 |
ttatgcctctttcaccctattcctctcatattgaaaatgttggaaacaa |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
24848285 |
ttatgcctctttcaccctattcctctcatagtgaaaatgttagaaacaa |
24848237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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