View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_low_6 (Length: 558)
Name: NF9527_low_6
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 17 - 549
Target Start/End: Complemental strand, 47422782 - 47422250
Alignment:
| Q |
17 |
gcttctgtttattacacttgtagtagacttgaggtttatgagtgccaacacttcatctcttggccaccttctcctatcctctaatttctccattattgta |
116 |
Q |
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| T |
47422782 |
gcttctgtttattacacttgtagtagacttgaggtttatgagtgccaacacttcatctcttggccaccttctcctatcctctaatttctccattattgta |
47422683 |
T |
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| Q |
117 |
ggcacaacaagggtagaagtggaatttgagtactctgtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagat |
216 |
Q |
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| T |
47422682 |
ggcacaacaagggtagaagtggaatttgagtactctgtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagat |
47422583 |
T |
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| Q |
217 |
tgttagaaggattactagggttttgtgggtgcaattgtgtagaagaagaagaagaatatcccgtggctagatatttgttcaagaattcaatgatgttggc |
316 |
Q |
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| T |
47422582 |
tgttagaaggattattagggttttgtgggtgcaattgtgtagaagaagaagaagaatatcctgtggctagatatttgttcaagaattcaatgatgttggc |
47422483 |
T |
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| Q |
317 |
ttgtctatcacttgcaatagcttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttga |
416 |
Q |
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| T |
47422482 |
ttgtctatcacttgcaatagcttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttga |
47422383 |
T |
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| Q |
417 |
tctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgctattattttgttaaccactgtctcacaaaaactcttcaacatttcaa |
516 |
Q |
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| T |
47422382 |
tctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgctattattttattaaccactgtctcacaaaaactcttcaacatttcaa |
47422283 |
T |
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| Q |
517 |
atctatcacggcgcctcttcctctttttgttct |
549 |
Q |
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| T |
47422282 |
atctatcacggcgcctcttcctctttttgttct |
47422250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 524
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
372 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
471 |
Q |
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| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
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| Q |
472 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
524 |
Q |
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| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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