View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9527_low_9 (Length: 495)

Name: NF9527_low_9
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9527_low_9
NF9527_low_9
[»] chr6 (16 HSPs)
chr6 (18-477)||(6394355-6394813)
chr6 (321-472)||(6423010-6423161)
chr6 (278-476)||(14820443-14820641)
chr6 (292-476)||(6589474-6589658)
chr6 (54-225)||(14820140-14820311)
chr6 (316-476)||(19632227-19632387)
chr6 (317-476)||(10579888-10580047)
chr6 (349-476)||(7994333-7994460)
chr6 (264-361)||(14818152-14818248)
chr6 (53-127)||(6426035-6426109)
chr6 (378-476)||(6594757-6594855)
chr6 (275-346)||(6426279-6426350)
chr6 (441-474)||(12102219-12102252)
chr6 (328-388)||(7119002-7119062)
chr6 (328-388)||(7131480-7131540)
chr6 (21-65)||(14820083-14820127)
[»] chr7 (2 HSPs)
chr7 (262-476)||(15092302-15092515)
chr7 (94-139)||(15092659-15092704)
[»] chr1 (3 HSPs)
chr1 (18-260)||(49218728-49218976)
chr1 (278-327)||(49219072-49219121)
chr1 (274-374)||(33160474-33160578)
[»] chr4 (4 HSPs)
chr4 (364-476)||(21834457-21834569)
chr4 (433-473)||(1524637-1524677)
chr4 (429-474)||(553380-553425)
chr4 (433-474)||(570256-570297)
[»] chr3 (2 HSPs)
chr3 (444-476)||(51121044-51121076)
chr3 (443-476)||(51764591-51764624)
[»] chr8 (1 HSPs)
chr8 (433-474)||(21235463-21235504)


Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 6394355 - 6394813
Alignment:
Q  18 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394355 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatatta 6394454  T
Q  118 actttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6394455 actttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactaa 6394554  T
Q  218 aatggttgtcaaaaatccatcatccggccatggcctagccttttaaatttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaa 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6394555 aatggttgtcaaaaatccaccatccggccatggcctagccttttaaatttgtaaga-tgacattttaaaaaggaaatttctcagagaagtaaatgttgaa 6394653  T
Q  318 acaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcact 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6394654 acaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcact 6394753  T
Q  418 tacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttc 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394754 tacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttc 6394813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 321 - 472
Target Start/End: Original strand, 6423010 - 6423161
Alignment:
Q  321 aaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttac 420  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||  |||||  |||| | |||||| |||||||||    
T  6423010 aaaacaacttacagtgttcaaactttagcatagaaatttcagaatactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttac 6423109  T
Q  421 atcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccaca 472  Q
    || || ||| ||||||| |||||||||||||||||||||||||  |||||||    
T  6423110 atgaaaatctcccaaataaatctctctcaattgtgtgcagtttaataccaca 6423161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 278 - 476
Target Start/End: Original strand, 14820443 - 14820641
Alignment:
Q  278 cattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatac 377  Q
    ||||||||||||| || |||| ||||| |||||| || ||||||||| |||||||||||||||||||||||||  ||||||||| |||||||||||| |     
T  14820443 cattttaaaaaggcaaattctcagagatgtaaatcttaaaacaaaaacaacttacagtgttcaaacttcagcaacgcaatttcataatactagcaaagat 14820542  T
Q  378 ggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 476  Q
    | |||||||||||| | |  |||| |||| ||| |  ||||| || ||   || ||||||||||||||||||  ||||||||||||| |||||||||||    
T  14820543 gacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaaccccgccaaattaatctctctcagctgtgtgcagttttttaccacatgtt 14820641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 292 - 476
Target Start/End: Complemental strand, 6589658 - 6589474
Alignment:
Q  292 aatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgc 391  Q
    ||||||| |||||||| ||| || ||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||| ||| | |||||||| || |     
T  6589658 aatttctcagagaagtgaatattaaaacaaaaacaacttacagtgttcatactttagcacagcaatttcagaatactagtaaagatggcatccatgatgg 6589559  T
Q  392 aagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 476  Q
     |||  | ||||||| ||| |||||||| || ||||||||||| || |||||||   | | ||||||||||||||||||||||||    
T  6589558 gagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttttctaccacatgtt 6589474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 14820140 - 14820311
Alignment:
Q  54 atcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatattaactttcaagttggattaaaatacaaagtaagtttga 153  Q
    |||||||||||||||||||||||||||||||||||| || |||  | |||||||||  |||||| ||||||||||| || |||||| ||| |||||||||    
T  14820140 atcatacttcaaacacatatcattaatcaattcataagctatacacattatttactatatattagctttcaagttgaatcaaaatataaattaagtttga 14820239  T
Q  154 ctgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactgaaatggttg 225  Q
    |  | |||||||||||| || ||| ||||| || |||||| |||||  || |||||||||||  ||||||||    
T  14820240 ccactgagttgcgacttttggcgccgccatattaggcatcagcattcctttacaaattgactacaatggttg 14820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 476
Target Start/End: Original strand, 19632227 - 19632387
Alignment:
Q  316 aaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtca 415  Q
    ||||||||| ||||||||| ||||||||||||  |||||| |||| ||||||||||||| | |||||||| ||||||||   |||| |||| ||| ||||    
T  19632227 aaacaaaaacaacttacagggttcaaacttcataatagcattttcggaatactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtca 19632326  T
Q  416 cttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 476  Q
    |||  || |||||||||||||| ||||||  ||| |||| |||||||||||||||| ||||    
T  19632327 cttgaatgaatatcccccaaataaatctccttcagttgtttgcagttttctaccacgtgtt 19632387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 317 - 476
Target Start/End: Complemental strand, 10580047 - 10579888
Alignment:
Q  317 aacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattt-tcgtca 415  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||||| | |||||||| |||||||||  | | |||||||| || ||     
T  10580047 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc- 10579949  T
Q  416 cttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 476  Q
    |||| ||| | |||  |||| | ||||||||| | ||||||||||||||||||||||||||    
T  10579948 cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtt 10579888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 476
Target Start/End: Complemental strand, 7994460 - 7994333
Alignment:
Q  349 catagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctc 448  Q
    ||||| ||||||||||||||| || ||| |||||||  ||||| |||  ||||||||||||| |||||||| || || |||||| |||| ||||||| ||    
T  7994460 catagaaatttcagaatactaacagataaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttc 7994361  T
Q  449 aattgtgtgcagttttctaccacatgtt 476  Q
    | ||| ||||||||||||||||||||||    
T  7994360 agttgcgtgcagttttctaccacatgtt 7994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 14818152 - 14818248
Alignment:
Q  264 atttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 361  Q
    ||||||||||| | ||||||||||||| || |||| | ||| |||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  14818152 atttgtaagat-gtcattttaaaaaggcaaattctcaaagatgtaaatcttaaaacaaaaacaacttacagtgttcaaacttcagcaaagcaatttca 14818248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 6426035 - 6426109
Alignment:
Q  53 tatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatattaactttcaagt 127  Q
    ||||| |||||||||||||||||||| |||||||||| || |||||||||||||  ||||||||| |||||||||    
T  6426035 tatcacacttcaaacacatatcattagtcaattcataagctatatgccttattttgttcatattagctttcaagt 6426109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 476
Target Start/End: Complemental strand, 6594855 - 6594757
Alignment:
Q  378 ggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 476  Q
    ||||||| |||||| |||  ||||||||| |||||||||||| || |  | ||| |||||  || ||||||||||||||||||||||||||||||||||    
T  6594855 ggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccacatgtt 6594757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 6426279 - 6426350
Alignment:
Q  275 tgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttc 346  Q
    ||||||||||||||||  |||||| ||||||||||||  | ||||||||| |||||||| ||||||||||||    
T  6426279 tgacattttaaaaaggctatttctcagagaagtaaatcataaaacaaaaacaacttacaatgttcaaacttc 6426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 474
Target Start/End: Original strand, 12102219 - 12102252
Alignment:
Q  441 tctctctcaattgtgtgcagttttctaccacatg 474  Q
    ||||||||| ||||||||||||||||||||||||    
T  12102219 tctctctcagttgtgtgcagttttctaccacatg 12102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 7119002 - 7119062
Alignment:
Q  328 cttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacga 388  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||||| | | |||||||||    
T  7119002 cttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7119062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 7131480 - 7131540
Alignment:
Q  328 cttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacga 388  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||||| | | |||||||||    
T  7131480 cttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7131540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 14820083 - 14820127
Alignment:
Q  21 tacacatattatcaagttaaacatacttgagttatcatacttcaa 65  Q
    |||||||| ||||||||||||||| || ||||| |||||||||||    
T  14820083 tacacataatatcaagttaaacattctagagttttcatacttcaa 14820127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 262 - 476
Target Start/End: Complemental strand, 15092515 - 15092302
Alignment:
Q  262 aaatttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 361  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15092515 aaatttgaaagat-gacattttaaaaaggaaatttctcagagaagtaaatcttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 15092417  T
Q  362 gaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagt 461  Q
    ||||||||||||||| |||||||||||||| |||  |||| |||| ||| |||||||||||  |||| || |||||||||||||||||||||||||||||    
T  15092416 gaatactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagt 15092317  T
Q  462 tttctaccacatgtt 476  Q
    |||||| ||||||||    
T  15092316 tttctagcacatgtt 15092302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 15092704 - 15092659
Alignment:
Q  94 atatgccttatttacttcatattaactttcaagttggattaaaata 139  Q
    ||||||||||||||||| |||||| ||||||||||| || ||||||    
T  15092704 atatgccttatttactttatattagctttcaagttgaatcaaaata 15092659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 49218728 - 49218976
Alignment:
Q  18 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttca----- 112  Q
    |||| |||||||||||||||||||| ||  |||||||||||||  |||| |||||||||||||||||||||| || |||||||||||||||||||         
T  49218728 aggtgcacatattatcaagttaaacttatatgagttatcataccccaaatacatatcattaatcaattcataagctatatgccttatttacttcacttca 49218827  T
Q  113 tattaactttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcatt-atttcacaaatt 211  Q
    ||| | ||||||||||| || ||||| |||| || | ||||| || || ||||||| |||  |||||||||| ||||||||||||||    ||| |||||    
T  49218828 tatcagctttcaagttgaataaaaattcaaattatgcttgacagctgaattgcgacatatagcgctgccatggtgggcatcggcattccaatcataaatt 49218927  T
Q  212 gactgaaatggttgtcaaaaatccatcatccggccatggcctagccttt 260  Q
    ||||| ||||||||| ||| |||| ||||||  ||||||| ||||||||    
T  49218928 gactgcaatggttgttaaacatccgtcatcctaccatggcgtagccttt 49218976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 49219072 - 49219121
Alignment:
Q  278 cattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaa 327  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49219072 cattttaaaaaggaaatttcttagagaagtaaatcttgaaacaaaaagaa 49219121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 374
Target Start/End: Original strand, 33160474 - 33160578
Alignment:
Q  274 ttgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatacta 369  Q
    ||||||||||||||| | ||||||| |||||||||||| || || |||||| ||||||||  ||||    |||||| ||||||||| ||||| |||||||    
T  33160474 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagcactttcataatacta 33160573  T
Q  370 gcaaa 374  Q
    |||||    
T  33160574 gcaaa 33160578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 364 - 476
Target Start/End: Complemental strand, 21834569 - 21834457
Alignment:
Q  364 atactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 463  Q
    ||||||||||| | |||||||||||||| |||  | || ||| ||||||||||||| ||  | ||||||||||||||| ||||||| |||||| ||  ||    
T  21834569 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtcacttaaatgcaaatcccccaaattaatttctctcagttgtgtacatctt 21834470  T
Q  464 tctaccacatgtt 476  Q
    ||||||| |||||    
T  21834469 tctaccatatgtt 21834457  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 1524677 - 1524637
Alignment:
Q  433 caaattaatctctctcaattgtgtgcagttttctaccacat 473  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  1524677 caaattaatctctctcagttgtgtgcagttttctatcacat 1524637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 553380 - 553425
Alignment:
Q  429 cccccaaattaatctctctcaattgtgtgcagttttctaccacatg 474  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||    
T  553380 cccccaaatcgatctctctaagttgtgtgcagttttctaccacatg 553425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Original strand, 570256 - 570297
Alignment:
Q  433 caaattaatctctctcaattgtgtgcagttttctaccacatg 474  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  570256 caaattgatctccctcagttgtgtgcagttttctaccacatg 570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 476
Target Start/End: Complemental strand, 51121076 - 51121044
Alignment:
Q  444 ctctcaattgtgtgcagttttctaccacatgtt 476  Q
    |||||||||||||||||||||||||||||||||    
T  51121076 ctctcaattgtgtgcagttttctaccacatgtt 51121044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Complemental strand, 51764624 - 51764591
Alignment:
Q  443 tctctcaattgtgtgcagttttctaccacatgtt 476  Q
    ||||||||||||||||||||||| ||||||||||    
T  51764624 tctctcaattgtgtgcagttttcaaccacatgtt 51764591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Original strand, 21235463 - 21235504
Alignment:
Q  433 caaattaatctctctcaattgtgtgcagttttctaccacatg 474  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  21235463 caaattgatctccctcagttgtgtgcagttttctaccacatg 21235504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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