View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_1 (Length: 782)
Name: NF9528_low_1
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 729; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 18 - 778
Target Start/End: Complemental strand, 37881166 - 37880406
Alignment:
| Q |
18 |
gtgctcaagctttcatgaaccctgaattgttaaagctagctgcaactgccacattattaaacaacaacataaatttgggttcgcataatcaacaacaaat |
117 |
Q |
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| T |
37881166 |
gtgctcaagctttcatgaaccctgaattgttaaagctagctgcaacggccacattattaaacaacaacataaatttgggttcgcataatcaacaacaaat |
37881067 |
T |
|
| Q |
118 |
caataatgctgctaatggtactcaacaacaagtgcaaaatcaagtttacaatcaagatcaatttcaaataccaactcaaactcacaatgtgaataatggc |
217 |
Q |
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| T |
37881066 |
caataatgctgctaatggtactcaacaacaagtgcaaaatcaagtttacaatcaagatcaatttcaaataccaactcaaacacacaatgtgaataatggc |
37880967 |
T |
|
| Q |
218 |
ttatttggaaacatgagttgttcaagttcagctgaaaatacaaatccttgttattttggagaggacttgatttctaaacaatattcagaattgtttcatt |
317 |
Q |
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| T |
37880966 |
ttattaggaaacatgagttgttcaagttcagctgaaaatacaaatccttgttattttggagaggacttgatttctaaacaatattcagaattgtttcatt |
37880867 |
T |
|
| Q |
318 |
gcctaaataatgatggaaacaaaaacagtatgggatatgaatcagttatatcgactacgcctttatcgacgacaccaactccatcaccaacttatgtgaa |
417 |
Q |
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| T |
37880866 |
gcctaaataatgatggaaacaaaaacagtatgggatatgaatcagttatatcgactacgcctttatcgacgacaccaactccatcaccaacttatgtgaa |
37880767 |
T |
|
| Q |
418 |
tagctgcacagaggaagagagggatacatattgcagtgacatattcaagttcgaaattccggagagtactttggatattaatgatttcttgtaaatgtgt |
517 |
Q |
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| T |
37880766 |
tagctgcacagaggaagagagggatacatattgcagtgacatattcaagttcgaaattccggagagtactttggatattaatgatttcttgtaaatgtgt |
37880667 |
T |
|
| Q |
518 |
gtatatacgattgcaaactttgttcaatatgcacaagtaatatagttttgtatcgtgcacgagtttatttttcattattggatcaataaatctaatagta |
617 |
Q |
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||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37880666 |
gtatatacgattgcagactttgtttaatatgaacaagtaagatagttttgtatcgtgcacgagtttatttttcattattggatcaataaatctaatagta |
37880567 |
T |
|
| Q |
618 |
tgttttattgatcaaatagcgaaagttaatttatgcatgatgcaagacttacgtcacttgcgtattgtagaattagatgtatgtaaacttttagtttgca |
717 |
Q |
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| T |
37880566 |
tgttttattgatcaaatagcgaaagttaatttatgcatgatgcaagacttacgtcacttgcgcattgtagaattagatgtatgtaaacttttagtttgca |
37880467 |
T |
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| Q |
718 |
ttctttattcttggtgttatttaattttggggtcattaggaataatttgttgtcgtgatgt |
778 |
Q |
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| T |
37880466 |
ttctttattcttggtgttatttaattttggggtcattaggaataatttgttgtcgtgatgt |
37880406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Complemental strand, 38318114 - 38318068
Alignment:
| Q |
621 |
tttattgatcaaatagcgaaagttaatttatgcatgatgcaagactt |
667 |
Q |
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| T |
38318114 |
tttattgatcaaatagtgaaagctaatttatatatgatgcaagactt |
38318068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 682
Target Start/End: Original strand, 26219789 - 26219827
Alignment:
| Q |
644 |
taatttatgcatgatgcaagacttacgtcacttgcgtat |
682 |
Q |
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| T |
26219789 |
taatttatgcatgatgcaagacttatctcacttgcgtat |
26219827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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