View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_17 (Length: 249)
Name: NF9528_low_17
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 38922836 - 38923065
Alignment:
| Q |
14 |
agacagacaatattaaaaatttgtttcatagcagtatattaaaaaggatgcatttagtcatggaaaatgtacatttccagctccggttgtatatgaaaag |
113 |
Q |
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| T |
38922836 |
agacagacaatattaaaaatttgtttcatagcagtatattaaaaaggatacatttagtcatggaaaatgtacatttccagctccggttgtatataaaaag |
38922935 |
T |
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| Q |
114 |
taagattataagggtttgaaaaatactctatttaaatcactctattagtaaaagcacnnnnnnnnnnnggtgtcaagggtttggaccccacaccctgcat |
213 |
Q |
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| T |
38922936 |
taagattataagggtttgaaaaatactcaatacaaatcactctattagtaaaagtac--tttttttgtggtgtcaaggatttgaaccccacaccctgtat |
38923033 |
T |
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| Q |
214 |
atttcatgcattgtccttatcaattgagatga |
245 |
Q |
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|||| |||||||||||||||||| |||||||| |
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| T |
38923034 |
attttatgcattgtccttatcaactgagatga |
38923065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 11181935 - 11181983
Alignment:
| Q |
190 |
gggtttggaccccacaccctgcatatttcatgcattgtccttatcaatt |
238 |
Q |
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| T |
11181935 |
gggtttgaaccccgcaccttgcatatttcatgcattgtccataccaatt |
11181983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 33745160 - 33745109
Alignment:
| Q |
190 |
gggtttggaccccacaccctgcatatttcatgcattgtccttatcaattgag |
241 |
Q |
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| T |
33745160 |
gggtttgaaccccagaccttgcatattttatgcattgtccatatcaattgag |
33745109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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