View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_2 (Length: 470)
Name: NF9528_low_2
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 40878257 - 40877816
Alignment:
| Q |
18 |
cacgtgcgaccatgaacctt-acacttactgatctgatccaagtcatagggatcaatgacataactaactcacagtcacagacatattgtataaagtcaa |
116 |
Q |
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| T |
40878257 |
cacgtgcgaccatgaacctttacacttactgatctgatcctagtcatagggatcaatgacataactaactcacagtcacagacatattgtataaagtcaa |
40878158 |
T |
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| Q |
117 |
aatttcagaaacaacaacgtactagtacccgatttgtgtaatgccaaaatgtccaaataaatactactagtactaacaccattataaaaatgttactaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878157 |
aatttcagaaacaacaacgtactagtacccgatttgtgtaatgccaaaatgtccaaataaatactactagtactaacaccattataaaaatgttactaat |
40878058 |
T |
|
| Q |
217 |
acgttgaatttctttggttagttcttgccttcttcgtactaactgcgacatgctgaatcacccaaatgtaatacttcaacgtttacgtaatttccagcag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40878057 |
acgttgaatttctttggttagttcttgccttcttcgtactaactgcgacatgctgaatcacccaaacgtaatacttcaacgtttacgtaatttccagcag |
40877958 |
T |
|
| Q |
317 |
atatgtcagtagtaccttaatgtaaaatcaagagtcattgtacaaaattatcaagaaaattgtcaaagctggcctttgagtctatttaatttctttttac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877957 |
atatgtcagtagtaccttaatgtaaaatcaagagtcattgtacaaaattatctagaaaattgtcaaagctggcctttgagtctatttaatttctttttac |
40877858 |
T |
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| Q |
417 |
tctttgagttgggacagtttgtcctttttaaaatctgaccta |
458 |
Q |
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| T |
40877857 |
tctttgagttgggacagtttgtcctttttaaaatctgaccta |
40877816 |
T |
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