View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_21 (Length: 206)
Name: NF9528_low_21
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 3800866 - 3801036
Alignment:
| Q |
20 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3800866 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatc |
3800965 |
T |
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| Q |
120 |
aagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaa |
190 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
3800966 |
aagtagttggtgatgatgacataaaggcaatgtgtttgaaaatgaagaaaatgactattactaatatagaa |
3801036 |
T |
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Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 3789241 - 3789071
Alignment:
| Q |
20 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
3789241 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatc |
3789142 |
T |
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| Q |
120 |
aagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaa |
190 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
3789141 |
aagtagttggtgatgatgacataaaggaaatgtgtttgaaaatgaagaaaatgactattactaatatagaa |
3789071 |
T |
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