View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_22 (Length: 202)
Name: NF9528_low_22
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 20675076 - 20674902
Alignment:
| Q |
12 |
agcaaaggaagctttgggagatgaaatagaaggaagcatacaagaagatataagcatgcttgtatttaagaagactattgaagaattcaacaaaatgatg |
111 |
Q |
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| T |
20675076 |
agcaaaggaagctttgggagatgaaatagaaggaaccctacaagaagatatatccatgcttgtatttaagaagactattgaagaattcaacaaaatgatg |
20674977 |
T |
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| Q |
112 |
acaagttacaaagttgacaacataataagagaacaaatagatcaaattgtgtttgaagaaacattgagttatttt |
186 |
Q |
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| T |
20674976 |
acaagttgcaaagttgacaacataataagagaacaaatagatcaaattgtgtttgaagaaacattgagttatttt |
20674902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 19726829 - 19726699
Alignment:
| Q |
54 |
agaagatataagcatgcttgtatttaagaagactattgaagaattcaacaaaatgatgacaagttacaaagttgacaacataa------taagagaacaa |
147 |
Q |
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| T |
19726829 |
agaagatatatgcatgcttgcatttaggaagactgctgaagaattcaataaaaggatgacaagttgcaaagttgacaatataatagtattaagagaacaa |
19726730 |
T |
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| Q |
148 |
atagatcaaattgtgtttgaagaaacattga |
178 |
Q |
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| T |
19726729 |
atagatcaaattgtatttgaagaaacattga |
19726699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 26398489 - 26398368
Alignment:
| Q |
54 |
agaagatataagcatgcttgtatttaagaagactattgaagaattcaacaaaa-tgatgacaagttacaaagttgacaacataa------taagagaaca |
146 |
Q |
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|||||||||| ||||||||| ||||| |||||||| ||| ||||| || |||| |||||||||||| |||||||||| | |||| |||||||||| |
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| T |
26398489 |
agaagatatatgcatgcttgcatttaggaagactaatgatgaattaaaaaaaaatgatgacaagttgcaaagttgaccatataatagcagtaagagaaca |
26398390 |
T |
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| Q |
147 |
aatagatcaaattgtgtttgaa |
168 |
Q |
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|||||||||||||||||||||| |
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| T |
26398389 |
aatagatcaaattgtgtttgaa |
26398368 |
T |
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