View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_3 (Length: 438)
Name: NF9528_low_3
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 25990784 - 25990372
Alignment:
| Q |
11 |
gcaaaggaaaagtggggagttgacggatatggcacaatgaaaggcctaatccgtctcaggtcaggaaaggaaaactccggcgaaaacaatggcggtggag |
110 |
Q |
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| T |
25990784 |
gcaaaggaaaagtggggagttgacggatatggcacaatgaaaggtctaatccgtctcaggtcaggaaaggaaaactccggcgaaaacaatggcggtgggg |
25990685 |
T |
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| Q |
111 |
gtttggagggtgagaagagattgaacaatgatttgagcagggttgagatgatatatccaagttcaggtgatgaatatagtttagagaatagagttgatga |
210 |
Q |
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| T |
25990684 |
ttttggaggttgagaagagattgaacaatgatttgagcaggtttgagatgatatatccaagttcaggtgatgaacatagtttagagaatagagttgatga |
25990585 |
T |
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| Q |
211 |
acaagatttgcaaatcgcacatcttgaagaacagaatctatccttcaaggaaagaatttttctcatggaaagggaattgcgtgatttgaggcagcgtgtt |
310 |
Q |
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| T |
25990584 |
gcaagatttgcaaatcacacatcttgaagaacagaatctatcctttaaggaaagaatttttctcatggaaagggaattgagtgatttgaggcagcgtgtt |
25990485 |
T |
|
| Q |
311 |
gtatgcttggagaccgagggaaatggcgctggtgatcgtgagtctgagaatttcaacggcatagatgtttgctcggagaagagcgtcggaaatggtgatc |
410 |
Q |
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| T |
25990484 |
gtatgcttggagaccgagggaaatggcgctggtgatcgtgagtctgagaatttcaacggcatagatgtttgctcggagaagagcgtcggaaatggtgatc |
25990385 |
T |
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| Q |
411 |
actgatgaacatt |
423 |
Q |
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| T |
25990384 |
actgatgaacatt |
25990372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 408
Target Start/End: Complemental strand, 25968609 - 25968318
Alignment:
| Q |
121 |
tgagaagagattgaacaatgatttgagcagggttgagatgatatatccaa---gttcaggtgatgaatatagtttagagaatagagttgatgaacaagat |
217 |
Q |
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| T |
25968609 |
tgagaagagattgaacaatgatttaagtaggtttgagatgatatatccaacaagttgtggtgataaacataatttggagaatagggttgatgaacatgat |
25968510 |
T |
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| Q |
218 |
ttgcaaatcgcacatcttgaagaacagaatctatccttcaaggaaagaatttttctcatggaaagggaattgcgtgatttgaggcagcgtgttgtatgct |
317 |
Q |
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||| |||| ||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
25968509 |
ttgaaaattaaacatcttgaagaacaaaatctaacacttaaggaaagaatttttctcatggaaagggaattgggtgacttgaggcagcgtgttgtatgct |
25968410 |
T |
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| Q |
318 |
tggagacc-gagggaaatggcgctggtgatcgtgagtctgagaatttcaacggcatagatgtttgctcggagaagagcgtcggaaatggtga |
408 |
Q |
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| T |
25968409 |
ttgagaccggggggaattggcgctggtgataacgagtctgagaatttcaacgaccaagatgtttgcttggagaagagcatcgaaaatggtga |
25968318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 25968722 - 25968669
Alignment:
| Q |
14 |
aaggaaaagtggggagttgacggatatggcacaatgaaaggcctaatccgtctc |
67 |
Q |
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||||||||||||||| | || | ||||||||| ||||||||||||||||||||| |
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| T |
25968722 |
aaggaaaagtggggactggatgcatatggcaccatgaaaggcctaatccgtctc |
25968669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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