View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_4 (Length: 366)
Name: NF9528_low_4
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 29 - 354
Target Start/End: Original strand, 1019903 - 1020222
Alignment:
| Q |
29 |
gagggttaccgttacagaattgaacgtcgaggcagaaacggttgatgaaatgagaaccaccgccgccgatagcagtgtctcgagagactaaaacagagta |
128 |
Q |
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| T |
1019903 |
gagggttaccgttacggaattgaacgtcgaggcagaaacggttgatgaaatgagaacc------gccgatagcagtgtctggagagaccaaaacagagta |
1019996 |
T |
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| Q |
129 |
aacagaatcgttaaatcttgaattagattcaatgctatcgatttcgatgttgttgaaatcgatattgggaagagagagccaaagattattccatctcttt |
228 |
Q |
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| T |
1019997 |
aacagaatcgataaattttgaattagattcaatgctatcgattttgatgttgttgaaatcgatattgggaagagagagccaaagattattccatctcttt |
1020096 |
T |
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| Q |
229 |
gaaagaatgcttgtagcaactgcttctttggtggatacaagagagaggatgtagtgaagaacatcgtcctgtaacctgctgatcttatctgccactgcca |
328 |
Q |
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| T |
1020097 |
gaaagaatgcttgtagcaactgcttctttggtggatacaagagagaggatgtagtgaagaacatcgtccggtaacctgctgatcttatccgccactgcca |
1020196 |
T |
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| Q |
329 |
atgatgcttttgaacttctccgtctc |
354 |
Q |
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| T |
1020197 |
atgatgcttttgaacttctccgtctc |
1020222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 103 - 317
Target Start/End: Original strand, 1025868 - 1026082
Alignment:
| Q |
103 |
gtgtctcgagagactaaaacagagtaaacagaatcgttaaatcttgaattagattcaatgctatcgatttcgatgttgttgaaatcgatattgggaagag |
202 |
Q |
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| T |
1025868 |
gtgtctcgagagaccaaaacagagtaaacagaatcgttaaatcttgaattagattcactgctataaacttcgatgtcggtgaaatcgatattgttaagat |
1025967 |
T |
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| Q |
203 |
agagccaaagattattccatctctttgaaagaatgcttgtagcaactgcttctttggtggatacaagagagaggatgtagtgaagaacatcgtcctgtaa |
302 |
Q |
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| T |
1025968 |
agcgccagagatgactcaatctctttgaaagaatgcttgttgcaacagcttctttggtggtgaaaagtgagagaatgtggcaaagaacatcctccggtaa |
1026067 |
T |
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| Q |
303 |
cctgctgatcttatc |
317 |
Q |
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| T |
1026068 |
accgctgatcttatc |
1026082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 268
Target Start/End: Original strand, 990783 - 990946
Alignment:
| Q |
105 |
gtctcgagagactaaaacagagtaaacagaatcgttaaatcttgaattagattcaatgctatcgatttcgatgttgttgaaatcgatattgggaagagag |
204 |
Q |
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| T |
990783 |
gtctcgagagaccaaaacagagtacacaaattcgttaaaacggagattggattcaacggtattcactctgatgtcggtgaaatcgatattgggaagataa |
990882 |
T |
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| Q |
205 |
agccaaagattattccatctctttgaaagaatgcttgtagcaactgcttctttggtggatacaa |
268 |
Q |
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| T |
990883 |
tgccagagattagtccacctcttggacaaaacgcttgtagcaactgcttcttttgtggatacaa |
990946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 1013120 - 1013162
Alignment:
| Q |
218 |
tccatctctttgaaagaatgcttgtagcaactgcttctttggt |
260 |
Q |
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| T |
1013120 |
tccatctctttgatagaatgcttgttgcaactgattctttggt |
1013162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 39 - 354
Target Start/End: Complemental strand, 8315783 - 8315474
Alignment:
| Q |
39 |
gttacagaattgaacgtcgaggcagaaacggttgatgaaatgagaaccaccgccgccgatagcagtgtctcgagagactaaaacagagtaaacagaatcg |
138 |
Q |
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| T |
8315783 |
gttacagaattgaacgtcgaggcagaaacggttgatgaaatgagaacc------gccgatagcagtgtctcgagagactaaaacagagtaaacagaatcg |
8315690 |
T |
|
| Q |
139 |
ttaaatcttgaattagattcaatgctatcgatttcgatgttgttgaaatcgatattgggaagagagagccaaagattattccatctctttgaaagaatgc |
238 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8315689 |
ttaaatcttgaattagattcaatgttatcgattttgatgttgttgaaatcgatattgggaagagagagccaaagattattccatctctttgaaagaatgc |
8315590 |
T |
|
| Q |
239 |
ttgtagcaactgcttctttggtggatacaagagagaggatgtagtgaagaacatcgtcctgtaacctgctgatcttatctgccactgccaatgatgcttt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||||| |||||||||||| |
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| T |
8315589 |
ttgtagcaactgcttctttggtggatacaagagagaggatgtagtgaagaacattatcaggtaacctgctcatcttatccgccactgtcaatgatgcttt |
8315490 |
T |
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| Q |
339 |
tgaacttctccgtctc |
354 |
Q |
| |
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|||||||||||||||| |
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| T |
8315489 |
tgaacttctccgtctc |
8315474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 8311786 - 8311696
Alignment:
| Q |
227 |
ttgaaagaatgcttgtagcaactgcttctttggtggatacaagagagaggatgtagtgaagaacatcgtcctgtaacctgctgatcttatc |
317 |
Q |
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| T |
8311786 |
ttgaaagaatgcttgttgcaacaacttctttggtggtgaaaagtgagagaatgtggcaaagaacatcgtccggtaaaccgctgatcttatc |
8311696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 296
Target Start/End: Complemental strand, 35766545 - 35766309
Alignment:
| Q |
54 |
gtcgaggcagaaacggttgatgaaatgagaaccaccgccgccgatagcagtgtctcgagagactaaaacagagtaaacagaatcgttaaatcttgaatta |
153 |
Q |
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| T |
35766545 |
gtcgaggctaaaacggttgatggaatgagaaccaccgccg---atagca---tctcgagagatcaaaacggagttaatagagttgttaaatttggaatac |
35766452 |
T |
|
| Q |
154 |
gattcaatgctatcgatttcgatgttgttgaaatcgatattgggaagagagagccaaagattattccatctctttgaaagaatgcttgtagcaactgctt |
253 |
Q |
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|||| ||||||||| ||||| |||| ||||||||||||||| | |||| ||||||||| | |||||||||| || | || |||||| ||||| || | |
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| T |
35766451 |
gatttaatgctatcaatttcaatgtatttgaaatcgatattgtctatagagcgccaaagatgagtccatctcttggacaaaacgcttgtggcaacggcct |
35766352 |
T |
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| Q |
254 |
ctttggtggatacaagagagaggatgtagtgaagaacatcgtc |
296 |
Q |
| |
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| T |
35766351 |
cttgggtggagacaaaagagagaatgtggcaaagaacatcgtc |
35766309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 40639932 - 40639890
Alignment:
| Q |
218 |
tccatctctttgaaagaatgcttgtagcaactgcttctttggt |
260 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
40639932 |
tccatctctttgaaagaatgcttgttgcaactgattctttggt |
40639890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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