View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9528_low_9 (Length: 287)
Name: NF9528_low_9
Description: NF9528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9528_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 44261727 - 44261987
Alignment:
| Q |
9 |
attatactcaatccaacaaagattaaacaatttaaatatgtcactggatgcaacaaataaaaaatcatggcattatggcatatatatggtagaaacatgg |
108 |
Q |
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| T |
44261727 |
attatactcaatccaacaaagattaaacaatttaaatatgtcactggatgcaacaaataaaaaatcatggcattatggcatatatatggtagaaacatgg |
44261826 |
T |
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| Q |
109 |
cggatataaatagnnnnnnnngtgcagaaaagtatatatgaacatatgagaagtgcaatgaataatgataaactactaaccagatgttggaggtttatgc |
208 |
Q |
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| T |
44261827 |
cggatataaatagaaaaaaaagtgcagaaaagtatatatgaacatatgagaagtgcaatgaataatgataaactactaaccagatgttggaggtttatgc |
44261926 |
T |
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| Q |
209 |
tgcgtttaaacaacatcttcacttttgctttaaaaaacctcttaggacttgtgtatatataact |
272 |
Q |
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| T |
44261927 |
tgcgttta---aacatcttcacttttgctttaaaaaacctcttaggacttgtgtatatataact |
44261987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 47872343 - 47872306
Alignment:
| Q |
151 |
catatgagaagtgcaatgaataatgataaactactaac |
188 |
Q |
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| T |
47872343 |
catatgagaagtgcaatgaataatcataaactactaac |
47872306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 33857163 - 33857133
Alignment:
| Q |
15 |
ctcaatccaacaaagattaaacaatttaaat |
45 |
Q |
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| T |
33857163 |
ctcaatccaacaaagattaaacaatttaaat |
33857133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 33923760 - 33923790
Alignment:
| Q |
15 |
ctcaatccaacaaagattaaacaatttaaat |
45 |
Q |
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| T |
33923760 |
ctcaatccaacaaagattaaacaatttaaat |
33923790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 14961596 - 14961554
Alignment:
| Q |
149 |
aacatatgagaagtgcaatgaataatgataaactactaaccag |
191 |
Q |
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| T |
14961596 |
aacatatgtgaaatgcaatgaataatcataaactactaaccag |
14961554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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