View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9529_high_2 (Length: 339)
Name: NF9529_high_2
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9529_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 42393589 - 42393906
Alignment:
| Q |
1 |
ctcttcttctaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactca |
100 |
Q |
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| T |
42393589 |
ctcttctactaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaattca |
42393688 |
T |
|
| Q |
101 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcttgttcatacaaactcaatggtattaagttcttcaacacgcgccttagggcacatgtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
42393689 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggtattaagttcttcaacgcacgccttagggcacatgtta |
42393788 |
T |
|
| Q |
201 |
gcattctcaaataaattttcatttgaatcagagttaaacaaaccatataccgcnnnnnnnngaagtgagaagacgcaaaacataaatgtgtaacaaaggt |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
42393789 |
gcattctcaaataaattttaatttgaatcagagttaaacaaaccatataccgcaaaaaa---aagtgagaagacgctaaacataaatgtgtaacaaaggt |
42393885 |
T |
|
| Q |
301 |
agcataccaggagaagagcct |
321 |
Q |
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||||||||||||||||||||| |
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| T |
42393886 |
agcataccaggagaagagcct |
42393906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42377037 - 42377182
Alignment:
| Q |
1 |
ctcttcttctaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactca |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | ||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
42377037 |
ctcttctactaagttatcttttccaaccacagtttctaactcctcttgaaccttcctcatcacttctggtttgttcatcatttctgccattacaaactca |
42377136 |
T |
|
| Q |
101 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcttgtt |
146 |
Q |
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| || ||||||||||||||||||||||| | ||||||||| |||| |
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| T |
42377137 |
attgtgttggaggatgtgtctgatccacccactaccatgtcctgtt |
42377182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 42387386 - 42387539
Alignment:
| Q |
1 |
ctcttcttctaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||| |||||||| ||| ||| |||||||| |
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| T |
42387386 |
ctcttctactaagttatctttcccaaccacgatttccagttcctcttgaaccttcctcattacttctgg-ttgtccatcatttatgctattacaaactca |
42387484 |
T |
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| Q |
101 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcttgttcatacaaac |
155 |
Q |
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| || ||||||||||||||||||||||| | ||||||||| |||||||| |||| |
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| T |
42387485 |
attgtgttggaggatgtgtctgatccacccactaccatgtcctgttcatataaac |
42387539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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