View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9529_high_4 (Length: 264)

Name: NF9529_high_4
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9529_high_4
NF9529_high_4
[»] chr6 (3 HSPs)
chr6 (17-255)||(26563686-26563925)
chr6 (140-251)||(26558322-26558433)
chr6 (146-251)||(26551682-26551787)
[»] chr1 (1 HSPs)
chr1 (141-251)||(50935895-50936005)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 26563686 - 26563925
Alignment:
Q  17 cttataaatagataacttcgtaaa-gagtatgttaaggaagagatcaatcttctacatttacaaaatgtaaaaacttttctttggttgttttcgtagaat 115  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26563686 cttataagtatataacttcgtaaaagagtatgttaaggaagagatcaatcttctacatttacaaaatgtaaaaacttttctgtggttgttttcgtagaat 26563785  T
Q  116 attttgtttacctcacattattgcggtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctcta 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26563786 attttgtttacctcacattatttcggtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctcta 26563885  T
Q  216 attgtggacaaaaaccttgaagctgctaccgaagtattat 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26563886 attgtggacaaaaaccttgaagctgctaccgaagtattat 26563925  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 26558322 - 26558433
Alignment:
Q  140 ggtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattgtggacaaaaaccttgaagct 239  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||||||||    
T  26558322 ggttttgcagactgcagtcctgctttggatgcctgaccctgcaggacgcgacgtagaaatcattaggaagtctttaattgtggacaaaaatcttgaagct 26558421  T
Q  240 gctaccgaagta 251  Q
    ||||||||||||    
T  26558422 gctaccgaagta 26558433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 26551682 - 26551787
Alignment:
Q  146 tcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattgtggacaaaaaccttgaagctgctacc 245  Q
    ||||||||||||||| |||||| ||||||||||||| | |||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||    
T  26551682 tcagactgcagttctactttggttgcctgaccctgccgcacgtgatgcagaaatcattaggaagtcgctagttgtggacagaaaccttgaagctgccacc 26551781  T
Q  246 gaagta 251  Q
    ||||||    
T  26551782 gaagta 26551787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 50936005 - 50935895
Alignment:
Q  141 gtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattgtggacaaaaaccttgaagctg 240  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||||| |  |||||||| |||||||| ||| ||||||| | ||||||||||||||    
T  50936005 gtttttcagactgctgttctactttggatgcctgaccatgcaggacgtgatgtggaaatcatcaggaagtcactagttgtggatagaaaccttgaagctg 50935906  T
Q  241 ctaccgaagta 251  Q
    |||||||||||    
T  50935905 ctaccgaagta 50935895  T

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