View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9529_low_1 (Length: 685)
Name: NF9529_low_1
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9529_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 653; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 8 - 668
Target Start/End: Complemental strand, 47874282 - 47873622
Alignment:
| Q |
8 |
agaagcagagaagatagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagag |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47874282 |
agaagcagaaaagatagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagag |
47874183 |
T |
|
| Q |
108 |
tctaaacaagggataaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47874182 |
tctaaacaagggataaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaa |
47874083 |
T |
|
| Q |
208 |
aggacttcctccttatatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47874082 |
gggacttcctccttatatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacat |
47873983 |
T |
|
| Q |
308 |
tgctatggacttggcttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873982 |
tgctatggacttggcttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaac |
47873883 |
T |
|
| Q |
408 |
aatttcaatgctaagcttggggatttcggattggcaaggcttgtggatcatgagaaaggatcacaatcagacaccacaatcatagctgggaccatggggt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873882 |
aatttcaatgctaagcttggggatttcggattggcaaggcttgtggatcatgagaaaggatcacaatcagacaccacaatcatagctgggaccatggggt |
47873783 |
T |
|
| Q |
508 |
acatagctcctgaatatatcacaacagggaaggctacaaaggaatcagatatatacagctttggcattgtttcattggaattagcaagtggaagaaaacc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873782 |
acatagctcctgaatatatcacaacagggaaggctacaaaggaatcagatatatacagctttggcattgtttcattggaattagcaagtggaagaaaacc |
47873683 |
T |
|
| Q |
608 |
agttgatcttaatgccaaggaggatcaaatggctatatttgattgggtttgggagctttat |
668 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873682 |
agttgatcttaatgccaaggaggatcaaatggctatatttgattgggtttgggagctttat |
47873622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Original strand, 47871273 - 47871920
Alignment:
| Q |
18 |
aagatagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagagtctaaacaag |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871273 |
aagataggacaaggtggttttggtggtgtttataaaggctatttgaaagacatagattccaatgttgctataaagagaatatcaagagagtctaaacaag |
47871372 |
T |
|
| Q |
118 |
ggataaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaaaggacttcct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
47871373 |
ggataaaggaatatgcaactgaagtgaagatcattagccaacttaggcacaggaatttagtacaactaattggttggtgtcacatgaaaaaagacttcct |
47871472 |
T |
|
| Q |
218 |
ccttatatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgctatggac |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47871473 |
ccttatatacgagttcatgcaaaatggtagcttagattctcacctatatcgcggaaaaagcatattgacatggcaagtgaggtacaacattgctatggat |
47871572 |
T |
|
| Q |
318 |
ttggcttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatg |
417 |
Q |
| |
|
|||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||||| || | |||||||||||||| ||||| ||| | | |||||||| |
|
|
| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttggacgatagtttcaatg |
47871672 |
T |
|
| Q |
418 |
ctaagcttggggatttcggattggcaaggcttgtggatcatgagaaaggatcacaatcagacaccacaatcatagctgggaccatggggtacatagctcc |
517 |
Q |
| |
|
| |||||||| ||||| || ||||| ||| | |||||||||||||||| ||||||| || ||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
47871673 |
caaagcttggtgattttgggttggctaggttggtggatcatgagaaagtatcacaa--ag-taccacgatcatagctgggactatggggtatatagctcc |
47871769 |
T |
|
| Q |
518 |
tgaatatatcacaacagggaaggctacaaaggaatcagatatatacagctttggcattgtttcattggaattagcaagtggaagaaaaccagttgatctt |
617 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
47871770 |
tgaatatttcacaacagggaaagctacaaaggaatctgatatatacagttttggtattgtttcattggaattagcaagtggaagaaaaccaattgatcgt |
47871869 |
T |
|
| Q |
618 |
aatgccaaggaggatcaaatggctatatttgattgggtttgggagctttat |
668 |
Q |
| |
|
|| |||||||||| |||| |||||||||||||| |||| ||||| |||||| |
|
|
| T |
47871870 |
aaggccaaggagggtcaagtggctatatttgatcgggtctgggacctttat |
47871920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 22 - 601
Target Start/End: Original strand, 36931006 - 36931579
Alignment:
| Q |
22 |
tagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagagtctaaacaagggat |
121 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||||| || || || |||||||| | ||||| |||||||||||||||| ||| || || |
|
|
| T |
36931006 |
tagggcaaggtggttttggtggtgtatacaaaggttatttgaaagacttaaattcctatgttgctgtcaagaggatatcaagagagtctagacagggaat |
36931105 |
T |
|
| Q |
122 |
aaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaaaggacttcctcctt |
221 |
Q |
| |
|
| ||||| || |||||||||||| |||| |||| | ||||| ||||||||||||||||| |||||||||| || | ||| || || || || ||| |
|
|
| T |
36931106 |
actagaatacgccactgaagtgaaggtcataagccaattgagacacaggaatttagtacaacttcttggttggtgccataggaagaatgattttcttctt |
36931205 |
T |
|
| Q |
222 |
atatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgctatggacttgg |
321 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| | ||| ||| ||||||||||| ||||||||| || || || ||| ||||| |
|
|
| T |
36931206 |
atatatgagttcatgtcaaatggaagcttagattctcatctatacagtaaaaagagcttattgacatggacaatgaggtataatatagcattgggcttgg |
36931305 |
T |
|
| Q |
322 |
cttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatgctaa |
421 |
Q |
| |
|
|||||||| | | ||||| || |||||||||||||| ||||||||||| ||||| | |||||||| ||||| ||||| || |||||||||| |
|
|
| T |
36931306 |
cttcagcattgctttacctacaggaagaatgggaacagtgtgtgcttcacagggacattaaatccagtaacattatgttggattcatgtttcaatgctcg |
36931405 |
T |
|
| Q |
422 |
gcttggggatttcggattggcaaggcttgtggatcatgagaaaggatcacaatcagacaccacaatcatagctgggaccatggggtacatagctcctgaa |
521 |
Q |
| |
|
|||||| ||||| || || || |||||||| |||||||||| || |||||| |||||||| ||||||||||| | ||| || || || |||||| |
|
|
| T |
36931406 |
gcttggtgattttggtttagctaggcttgtagatcatgagacggggtcacaa------accacaattatagctgggacaaggggttatattgcacctgaa |
36931499 |
T |
|
| Q |
522 |
tatatcacaacagggaaggctacaaaggaatcagatatatacagctttggcattgtttcattggaattagcaagtggaag |
601 |
Q |
| |
|
||| ||||| |||| ||| |||| |||||||| ||||||| ||||||||| | || | ||||||| |||| |||||||| |
|
|
| T |
36931500 |
tatttcacatcaggaaagcctaccaaggaatctgatatattcagctttggagtagtgttattggaaatagccagtggaag |
36931579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 252 - 661
Target Start/End: Original strand, 5820862 - 5821252
Alignment:
| Q |
252 |
gattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgctatggacttggcttcagcacttttgtaccttcatgaagaat |
351 |
Q |
| |
|
|||||||| | ||| || ||||||| | ||||||||| ||| ||||| |||||||||| |||||| ||||| |||| | ||||||||||||||||||| |
|
|
| T |
5820862 |
gattctcaccaatatcgtggaaaaatcatattgacattgcatatgagctacaacattgttatggatttggc---agcattgttgtaccttcatgaagaat |
5820958 |
T |
|
| Q |
352 |
gggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatgctaagcttggggatttcggattggcaaggcttgt |
451 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| ||||| ||| | | |||||||| ||| ||||| |||||| ||||||| ||| | || |
|
|
| T |
5820959 |
gggaacaatgtg----acata--------aaatccaataacattatgttggactatattttcaatgttaaacttggtgatttcagattggctagg-tggt |
5821045 |
T |
|
| Q |
452 |
ggatcatgagaaaggatcacaatcagacaccacaatcatagctgggaccatggggtacatagctcctgaatatatcacaacagggaaggctacaaaggaa |
551 |
Q |
| |
|
|||||||||||||||||||||| || || | ||| || |||||||| ||| |||| ||||||||||| | |||||||| |||| |||||||||||| |
|
|
| T |
5821046 |
ggatcatgagaaaggatcacaa--ag-tactaaaattattgctgggactatgtggtatatagctcctga--acttcacaacaaggaaagctacaaaggaa |
5821140 |
T |
|
| Q |
552 |
tcagatatatacag--ctttggcattgtttcattggaattagcaagtggaagaaaaccagttgatcttaatgccaaggaggatcaaatggctatatttga |
649 |
Q |
| |
|
| ||||||||||| ||| | ||||||| ||| |||| | ||||||||| |||||| ||||| ||| ||||| || ||||| | ||||||||||| |
|
|
| T |
5821141 |
tatgatatatacagtttttttgaattgttttattaaaattggtaagtggaaggaaaccaactgatcgtaaggccaaagataatcaagtagctatatttga |
5821240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 466
Target Start/End: Original strand, 36934477 - 36934598
Alignment:
| Q |
345 |
gaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatgctaagcttggggatttcggattggcaa |
444 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | ||||| |||||||| ||||| ||| | | |||||| ||||||| |||||||| || | || | |
|
|
| T |
36934477 |
gaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttggactccgacttcaatactaagctaggggattttggtctagcta |
36934576 |
T |
|
| Q |
445 |
ggcttgtggatcatgagaaagg |
466 |
Q |
| |
|
|| | |||||||||||||||| |
|
|
| T |
36934577 |
ggttgatggatcatgagaaagg |
36934598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 36934148 - 36934199
Alignment:
| Q |
16 |
agaagatagggcaaggtggttttggtggtgtttataaaggctatttgaaaga |
67 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
36934148 |
agaagctaggccaaggtggttttggcggtgtttataagggctattttaaaga |
36934199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University