View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9529_low_11 (Length: 306)
Name: NF9529_low_11
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9529_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 3751935 - 3751657
Alignment:
| Q |
18 |
gttagcagataacatatatatgcaatcaaacagataagatataaatatacagaatgggcaaaacctttcaggttggttcatatagtttattatatttgta |
117 |
Q |
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| T |
3751935 |
gttagcagataacatatatatgcaatcaaacagataagatataaatatacagaatgggcaaaacctttcaggttggttcatatagtttattatatttgta |
3751836 |
T |
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| Q |
118 |
acagagacagcgaaagattgggagggagtgtaataatttgtgttgtgcgatcgagtattaatttctgtggttcacatgaaagaaaggaaacaagatttag |
217 |
Q |
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| T |
3751835 |
atagagacagcgaaagattgggagggagtgtaataatttgtgttgtgcgatcgagtattaatttctgtggttcacatgaaagaaaggaaacaagatttag |
3751736 |
T |
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| Q |
218 |
gtatagtgagctgtttgtaaatttctatttctgtatatagtatagtatatttcaagatcatgatagatacgggtctgtgct |
298 |
Q |
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| T |
3751735 |
gtatagtgagctgtttgtaaatttctatttctg--tatagtatagtatatttcaagatcatgatagatacgggtgtgtgct |
3751657 |
T |
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