View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9529_low_14 (Length: 257)
Name: NF9529_low_14
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9529_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 51186241 - 51186491
Alignment:
| Q |
1 |
atcatactccctaatcttcttcactctcccatcacacttattattatcaccatccaaacacacattctcatcctccgaaaaaaccttaatcctccaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186241 |
atcatactccctaatcttcttcactctcccatcacacttattattatcaccatctaaacacacattctcatcctccgaaaaaaccttaatcctccaaacc |
51186340 |
T |
|
| Q |
101 |
ttaaatgtttggtccaaacttgcactataaaccaaaaatcctacaacaactttctccatctcaagacaagcagccaaacatctaacaggtcctctatgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186341 |
ttaaatgtttggtccaaacttgcactataaaccaaaaatcctacaacaactttctccatctcaagacaagcagccaaacatctaacaggtcctctatgtc |
51186440 |
T |
|
| Q |
201 |
catccaaaaccatcaaacactcatgataacaactatcttcctctctgctcc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51186441 |
catccaaaaccatcaaacactcatgataacaactatcttcctctcttctcc |
51186491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14170511 - 14170287
Alignment:
| Q |
1 |
atcatactccctaatcttcttcactctcccatcacacttattattatcaccatccaaacacacattctcatcctccgaaaaaaccttaatcctccaaacc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14170511 |
atcatactccctaatcttcttcactctcccatcacacttattattatcaccatccaaacacacattctcatcctcagaaaaaaccttaatcctccaaacc |
14170412 |
T |
|
| Q |
101 |
ttaaatgtttggtccaaacttgcactataaaccaaaaatcctacaacaactttctccatctcaagacaagcagccaaacatctaacaggtcctctatgtc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
14170411 |
ttaaacgtttggtccaaacttgcactataaaccaaaaatcctacaacaactttctccatttcaagacaagcagccaaacatctcacaggtcctctatgtc |
14170312 |
T |
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| Q |
201 |
catccaaaaccatcaaacactcatg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
14170311 |
catccaaaaccatcaaacactcatg |
14170287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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