View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9529_low_18 (Length: 250)
Name: NF9529_low_18
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9529_low_18 |
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| [»] scaffold1572 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 21319156 - 21318926
Alignment:
| Q |
18 |
aggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctccaacacagctaagcatccctt |
117 |
Q |
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| T |
21319156 |
aggcatttgggttcaagcaccattgggctatgtgattcaagaaatagatgagacaccgtttcttctcctccacaatttccaacacagctaagcatccctt |
21319057 |
T |
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| Q |
118 |
cactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatatctttgacgggatcgatttatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21319056 |
cactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatatctttgacgggatcgatttatt |
21318957 |
T |
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| Q |
218 |
ccaagctcttgaccaagacggattacatgtg |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21318956 |
ccaagctcttgaccaagacggattacatgtg |
21318926 |
T |
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Target: scaffold1572 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 1061 - 1268
Alignment:
| Q |
14 |
aggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctccaacacagctaagcatc |
113 |
Q |
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||||| ||| ||||||| ||||||||||||| ||||| | || | |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
1061 |
aggcaagcacttgggtttaagcaccattgggttatgtaactcaaaaaattgatgagacaccgttttttctcctccacaatctccaacacagttaagcatc |
1160 |
T |
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| Q |
114 |
ccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatatctttgacgggatcgatt |
213 |
Q |
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||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1161 |
tcttgactaatcactcctctaatatacaaatcatcttttgtagctatcctaatttgaagcattctccataccaacatagatatctttgacgggatcgatt |
1260 |
T |
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| Q |
214 |
tattccaa |
221 |
Q |
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|||||||| |
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| T |
1261 |
tattccaa |
1268 |
T |
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