View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9529_low_3 (Length: 427)

Name: NF9529_low_3
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9529_low_3
NF9529_low_3
[»] chr3 (10 HSPs)
chr3 (15-412)||(1186522-1186907)
chr3 (15-412)||(1304119-1304504)
chr3 (15-412)||(1204586-1204971)
chr3 (89-205)||(476522-476635)
chr3 (89-206)||(8032801-8032918)
chr3 (80-206)||(481454-481577)
chr3 (80-222)||(5360515-5360654)
chr3 (79-125)||(1187099-1187145)
chr3 (338-379)||(777923-777964)
chr3 (338-379)||(8033035-8033076)
[»] scaffold0438 (1 HSPs)
scaffold0438 (89-196)||(5807-5914)
[»] chr8 (3 HSPs)
chr8 (89-196)||(26291426-26291533)
chr8 (89-196)||(26304683-26304790)
chr8 (89-196)||(26338038-26338145)
[»] chr2 (6 HSPs)
chr2 (89-221)||(43867038-43867167)
chr2 (83-206)||(43874716-43874836)
chr2 (158-199)||(38989600-38989641)
chr2 (338-378)||(38989436-38989476)
chr2 (338-390)||(43867266-43867318)
chr2 (338-390)||(43874947-43874999)
[»] chr5 (1 HSPs)
chr5 (236-276)||(33957707-33957747)
[»] chr4 (1 HSPs)
chr4 (338-378)||(52187150-52187190)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 412
Target Start/End: Complemental strand, 1186907 - 1186522
Alignment:
Q  15 tctagtccgaaaaagattttgaaatccggtttggtgatggtagaatagcaaccatacatacgagaatacatatgtatagttgaattgagaagcttggtac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||| ||||||||||||||||||    
T  1186907 tctagtccgaaaaagattttgaaatccggtttggtgatggtagaatagcaaccatacatacg------------tatagttaaattgagaagcttggtac 1186820  T
Q  115 atgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaatgtagaaaaggggtcgacaacagaacc 214  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  1186819 atgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgacgacagaacc 1186720  T
Q  215 atcatcatcatggttaaaacaaaaggaaaggtgcttgagagagagagtggttaatgctgggagattgaaagagtgagaacatgggaatatttgataataa 314  Q
    ||||||||||| |||| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1186719 atcatcatcatcgttacaagaaaaggaaaggtgctttagatagagagtggttaatgctgggagattgaaagagtgagaagatgggaatatttgataataa 1186620  T
Q  315 ccagagggaaccattaaatctttaccagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1186619 ccagagggaaccattaaatctttaccagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaag 1186522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 1304119 - 1304504
Alignment:
Q  15 tctagtccgaaaaagattttgaaatccggtttggtgatggtagaatagcaaccatacatacgagaatacatatgtatagttgaattgagaagcttggtac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||| ||||||||||||||||||    
T  1304119 tctagtccgaaaaagattttgaaatccggtttggtgatggtagaatagcaaccatacatacg------------tatagttaaattgagaagcttggtac 1304206  T
Q  115 atgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaatgtagaaaaggggtcgacaacagaacc 214  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  1304207 atgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgacgacagaacc 1304306  T
Q  215 atcatcatcatggttaaaacaaaaggaaaggtgcttgagagagagagtggttaatgctgggagattgaaagagtgagaacatgggaatatttgataataa 314  Q
    ||||||||||| |||| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1304307 atcatcatcatcgttacaagaaaaggaaaggtgctttagatagagagtggttaatgctgggagattgaaagagtgagaagatgggaatatttgataataa 1304406  T
Q  315 ccagagggaaccattaaatctttaccagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304407 ccagagggaaccattaaatctttaccagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaag 1304504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 412
Target Start/End: Complemental strand, 1204971 - 1204586
Alignment:
Q  15 tctagtccgaaaaagattttgaaatccggtttggtgatggtagaatagcaaccatacatacgagaatacatatgtatagttgaattgagaagcttggtac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||| ||||||||||||||||||    
T  1204971 tctagtccgaaaaagattttgaaatccggtttggtgatggtagaatagcaaccatacatacg------------tatagttaaattgagaagcttggtac 1204884  T
Q  115 atgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaatgtagaaaaggggtcgacaacagaacc 214  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  1204883 atgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagtattcaacatgttaaatgtggaaaaggggtcgacgacagaacc 1204784  T
Q  215 atcatcatcatggttaaaacaaaaggaaaggtgcttgagagagagagtggttaatgctgggagattgaaagagtgagaacatgggaatatttgataataa 314  Q
    ||||||||||| |||| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||    
T  1204783 atcatcatcatcgttacaagaaaaggaaaggtgctttagatagagagtggttaatgctgggagattgaaagagtgagaagatgggaatatttgataccaa 1204684  T
Q  315 ccagagggaaccattaaatctttaccagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204683 ccagagggaaccattaaatctttaccagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaag 1204586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 476635 - 476522
Alignment:
Q  89 tatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaat 188  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| ||||   ||  || ||||||   |||||||||||||||||||||||||||||||    
T  476635 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcat---ccagaattacacataagtcaatgatcaaagtattcaacatgttaaat 476539  T
Q  189 gtagaaaaggggtcgac 205  Q
    || ||||||||||||||    
T  476538 gtggaaaaggggtcgac 476522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 8032801 - 8032918
Alignment:
Q  89 tatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaat 188  Q
    ||||||| |||||| ||||||||||  |||||||||||||||||| |||||  |   ||||||||| | |||||||||||||||| ||||||||||||||    
T  8032801 tatagttaaattgacaagcttggtatttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttaaat 8032900  T
Q  189 gtagaaaaggggtcgaca 206  Q
    | ||||||||| ||||||    
T  8032901 gcagaaaagggatcgaca 8032918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 481577 - 481454
Alignment:
Q  80 atacatatgtatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaac 179  Q
    |||||||  ||||||| || ||||||||||||||| |||||||| ||||||| | ||||   ||  ||||||||||  ||||||||||||||||| ||||    
T  481577 atacatacatatagttaaactgagaagcttggtacttgaaatgcaaaggtttcgtgcat---ccagaagtacacagcagtcaatgatcaaagtatccaac 481481  T
Q  180 atgttaaatgtagaaaaggggtcgaca 206  Q
    ||||||||||  |||||||||||||||    
T  481480 atgttaaatgcggaaaaggggtcgaca 481454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 5360515 - 5360654
Alignment:
Q  80 atacatatgtatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaac 179  Q
    |||||| ||||||||| |||| | | ||||||||| |||||| ||| ||||||| |||||| |   |||||||||| |||||||| ||||||||  ||||    
T  5360515 atacatttgtatagttaaattaacaggcttggtacttgaaatacgatggttttgtgcattagcaagaagtacacagcggtcaatgctcaaagtagacaac 5360614  T
Q  180 atgttaaatgtagaaaaggggtcgacaacagaaccatcatcat 222  Q
    |||||||||   ||||||||||||||||   ||||||||||||    
T  5360615 atgttaaattcggaaaaggggtcgacaa---aaccatcatcat 5360654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 1187145 - 1187099
Alignment:
Q  79 aatacatatgtatagttgaattgagaagcttggtacatgaaatgcga 125  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  1187145 aatacatatgtagagttaaattgagaagcttggtacatgaaatgcga 1187099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 777923 - 777964
Alignment:
Q  338 accagtaagattaagagacgttaaagtgtgagatgaaaagaa 379  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||    
T  777923 accagaaagattaagagacgttaaagtttgacatgaaaagaa 777964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 8033035 - 8033076
Alignment:
Q  338 accagtaagattaagagacgttaaagtgtgagatgaaaagaa 379  Q
    |||||||||| ||||||||||||| ||||| |||||||||||    
T  8033035 accagtaagagtaagagacgttaaggtgtgcgatgaaaagaa 8033076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 5914 - 5807
Alignment:
Q  89 tatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaat 188  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||| |||||  |   ||||||||| | |||||||||||||||| |||||||||| |||    
T  5914 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 5815  T
Q  189 gtagaaaa 196  Q
    || |||||    
T  5814 gtggaaaa 5807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 26291533 - 26291426
Alignment:
Q  89 tatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaat 188  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||| |||||  |   ||||||||| | |||||||||||||||| |||||||||| |||    
T  26291533 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26291434  T
Q  189 gtagaaaa 196  Q
    || |||||    
T  26291433 gtggaaaa 26291426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 26304790 - 26304683
Alignment:
Q  89 tatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaat 188  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||| |||||  |   ||||||||| | |||||||||||||||| |||||||||| |||    
T  26304790 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26304691  T
Q  189 gtagaaaa 196  Q
    || |||||    
T  26304690 gtggaaaa 26304683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 26338145 - 26338038
Alignment:
Q  89 tatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaat 188  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||| |||||  |   ||||||||| | |||||||||||||||| |||||||||| |||    
T  26338145 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26338046  T
Q  189 gtagaaaa 196  Q
    || |||||    
T  26338045 gtggaaaa 26338038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 43867038 - 43867167
Alignment:
Q  89 tatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatgttaaat 188  Q
    ||||||| |||||| ||||||||||| ||| |||| ||||||||| ||||   ||  || || |||   |||||||||||||  ||||||||||||||||    
T  43867038 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactatacaactgtcaatgatcaaacgattcaacatgttaaat 43867134  T
Q  189 gtagaaaaggggtcgacaacagaaccatcatca 221  Q
    || |||||||| ||||| ||| ||||| |||||    
T  43867135 gtcgaaaagggctcgacgacacaaccagcatca 43867167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 43874716 - 43874836
Alignment:
Q  83 catatgtatagttgaattgagaagcttggtacatgaaatgcgaaggttttgcgcattacccctaagtacacagtggtcaatgatcaaagtattcaacatg 182  Q
    |||| |||||||| |||||| ||||||||||| ||| |||| ||||||||| ||||   ||  || || |||   |||||||||||||  ||||||||||    
T  43874716 cataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacgattcaacatg 43874812  T
Q  183 ttaaatgtagaaaaggggtcgaca 206  Q
    |||||||| |||||||| ||||||    
T  43874813 ttaaatgttgaaaagggctcgaca 43874836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 38989641 - 38989600
Alignment:
Q  158 gtcaatgatcaaagtattcaacatgttaaatgtagaaaaggg 199  Q
    ||||||||||||| |||||||||| |||||||| ||||||||    
T  38989641 gtcaatgatcaaactattcaacattttaaatgtggaaaaggg 38989600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 38989476 - 38989436
Alignment:
Q  338 accagtaagattaagagacgttaaagtgtgagatgaaaaga 378  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  38989476 accagaaagattaagagactttaaagtgtgacatgaaaaga 38989436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 43867266 - 43867318
Alignment:
Q  338 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 390  Q
    ||||| |||||||||||||||||| |||||| | |||||||| || |||||||    
T  43867266 accagaaagattaagagacgttaatgtgtgacacgaaaagaagcaagagggaa 43867318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 43874947 - 43874999
Alignment:
Q  338 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 390  Q
    ||||| |||||||||||| ||||| |||||| |||||||||| || |||||||    
T  43874947 accagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaa 43874999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 33957707 - 33957747
Alignment:
Q  236 aaaggaaaggtgcttgagagagagagtggttaatgctggga 276  Q
    ||||| ||||||||| ||||| |||||||||||||||||||    
T  33957707 aaaggcaaggtgctttagagacagagtggttaatgctggga 33957747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 52187190 - 52187150
Alignment:
Q  338 accagtaagattaagagacgttaaagtgtgagatgaaaaga 378  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  52187190 accagaaagattaagagacgttaaagtgcgacatgaaaaga 52187150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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