View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9529_low_5 (Length: 364)
Name: NF9529_low_5
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9529_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 11557997 - 11558329
Alignment:
| Q |
5 |
ttgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaattgaaccatttaactcttgatagcattggtggggttagagt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557997 |
ttgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcctggtcaagtggaattgaaccatttaactcttgatagcattggtggggttagagt |
11558096 |
T |
|
| Q |
105 |
ctctattcgcgcaaccaccgacgatgatgcaagccagccaaaaggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaagtt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11558097 |
ctctattcgcgcaaccaccgacgatgatgcaagccagccaaatggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaagtt |
11558196 |
T |
|
| Q |
205 |
tttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttttataattgagagtaaattgtggttttggtccttggatatgtcaaacgt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11558197 |
tttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttttataattgagagtaaattgtggttttggtccttggatatgtcaaacgt |
11558296 |
T |
|
| Q |
305 |
tatctatatatagtctctgaattaaccaaaatt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
11558297 |
tatctatatatagtctctgaattaaccaaaatt |
11558329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 11544589 - 11544903
Alignment:
| Q |
13 |
agaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaattgaaccatttaactcttgatagcattggtggggttagagtctctattc |
112 |
Q |
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|||||||| || |||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |
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| T |
11544589 |
agaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattggaattgaaccatttaactcttgctagcattggtggtattagagtctcttttc |
11544688 |
T |
|
| Q |
113 |
gcgcaaccaccgacgatgatgcaagccagccaaaaggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaagtttttgaatt |
212 |
Q |
| |
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|| ||||| ||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11544689 |
gcagcaccacggacgatgatacaagccagccaaatggcactattgttactgcggctaccaccctttggctccctctgcctgctctgaaagtttttgaatt |
11544788 |
T |
|
| Q |
213 |
cctcaaagatcctacaaaacgatcacaggtaacatgctttgttttataattgagagtaaattgtggttttggtccttggatatgtcaaacgttatctata |
312 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||| | ||||||||||| ||||||||||||||||| || |
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| T |
11544789 |
cctcaaagatcctacaaagcgatcacaggtaacatcttttgctttataattgagagtaaactgtagctttggtccttgaatatgtcaaacgttatc--ta |
11544886 |
T |
|
| Q |
313 |
tatagtctctgaattaa |
329 |
Q |
| |
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||||||||||||||||| |
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|
| T |
11544887 |
tatagtctctgaattaa |
11544903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 12064429 - 12064193
Alignment:
| Q |
5 |
ttgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaattgaaccatttaactcttgatagcattggtggggtt-agag |
103 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12064429 |
ttgctgatagaatggtcaaaatgttttgtgaatgcttaacaatgcctggtcaagtggaattgaaccatttaactcttgatagcattggtggggtttagag |
12064330 |
T |
|
| Q |
104 |
tctctattcgcgcaaccaccgacgatgatgcaagccagccaaaaggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaagt |
203 |
Q |
| |
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||||| |||||| ||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12064329 |
tctctcttcgcgataccaccgacaatgatacaagccagccaaatggcactgttgtaactgctgctaccactctttggctccctctgcctgctcagaaagt |
12064230 |
T |
|
| Q |
204 |
ttttgaattcctcaaagatcctacaaaacgatcacag |
240 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |
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|
| T |
12064229 |
ttttgaattgctcaaagatcctacaaaacgatcacag |
12064193 |
T |
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