View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9529_low_8 (Length: 308)
Name: NF9529_low_8
Description: NF9529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9529_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 37844010 - 37844298
Alignment:
| Q |
1 |
ctgtttgaatgatgatacaaatgtgacctctttagtgagctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcatacctt |
100 |
Q |
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| T |
37844010 |
ctgtttgaatgatgatacaaatgtgacctctttagtgagctgggctagatctgtatggctggaaacaggcaaaattgagtacattgctgattcatacctt |
37844109 |
T |
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| Q |
101 |
gcaagaagatttcccaattcagctgcgctgaccaggcaagtcactacaatgtttttattggcattgcaatgtacagagaaggatttacgaaagagaccaa |
200 |
Q |
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| T |
37844110 |
gcaagaagatttcccaattcagctgcgctgaccaggcaagtcactacaatgtttttattggcattgcaatgtacagagaaggatttacgaaagagaccaa |
37844209 |
T |
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| Q |
201 |
tcatgaaagatgttattggtttgtttaaaatgcacttgtttaagcggtgtgacgaggaagaatatggtgatgcggttgcagctaatatg |
289 |
Q |
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| T |
37844210 |
tcatgaaagatgttattggtttgtttaaaatgcacttgtttaagcggtgtgacgaggaagaatatggtgatgcggttgcagctaatatg |
37844298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 37845631 - 37845840
Alignment:
| Q |
9 |
atgatgatacaaatgtgacctctttagtgagctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaag |
108 |
Q |
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| T |
37845631 |
atgatgaaacaaaggagaccagtttagtgtgctgggcaagatctatatggctggaaacaggcaaaatcgagaagattgtcgattcataccttgccagttc |
37845730 |
T |
|
| Q |
109 |
atttcccaattcagctgcgctgaccaggcaagtcactacaatgtttttattggcattgcaatgtacagagaaggatttacgaaagagaccaatcatgaaa |
208 |
Q |
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| T |
37845731 |
atttcccaattcagtggaactaaccaagcaagtcacgtcaatgtttttattggcattgcaatgcacagcgacagatctgcgaaagagaccgaccatgaaa |
37845830 |
T |
|
| Q |
209 |
gatgttattg |
218 |
Q |
| |
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|||||||||| |
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| T |
37845831 |
gatgttattg |
37845840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 37832672 - 37832885
Alignment:
| Q |
32 |
ttagtgagctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattcagctgcgctga |
131 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||| ||||||||||||| | || || |
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| T |
37832672 |
ttagtgatctgggctagatctgtatggctgaaaacaggcaaaactgagaagattgttgatcattaccttgcaagtgaatttcccaattcatcagcactag |
37832771 |
T |
|
| Q |
132 |
ccaggcaagtcactacaatgtttttattggcattgcaatgtacagagaaggatttacgaaagagaccaatcatgaaagatgttattggtttgtttaaaat |
231 |
Q |
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||| ||||||| || || | ||| ||||||||| | ||| | |||||||||| |||| | || || | |||||||| ||||||| |||| ||||| | |
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| T |
37832772 |
ccaagcaagtctctgcagtcctttcattggcattacgatgcatagagaaggatccacgagataggccgaccatgaaaggtgttattcgtttttttaataa |
37832871 |
T |
|
| Q |
232 |
gcacttgtttaagc |
245 |
Q |
| |
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|||||||||||| |
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| T |
37832872 |
caacttgtttaagc |
37832885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 37838196 - 37838381
Alignment:
| Q |
33 |
tagtgagctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattcagctgcgctgac |
132 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||| | ||||||||| |||| |||| ||| ||| |||| ||||||||||||||| | ||| | |
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| T |
37838196 |
tagtgacctgggctagatctttatttatggaaacaagtaaaattgagaagattgttgatccatttctttcaagtgcatttcccaattcagcagtgctagc |
37838295 |
T |
|
| Q |
133 |
caggcaagtcactacaatgtttttattggcattgcaatgtacagagaaggatttacgaaagagaccaatcatgaaagatgttattg |
218 |
Q |
| |
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|| |||||||| | || || ||| ||||||||| ||||| |||||||||||| ||||| ||| || | ||||||||||||||||| |
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| T |
37838296 |
caagcaagtcaatgcagtgctttcattggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattg |
37838381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 37851533 - 37851708
Alignment:
| Q |
41 |
tgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattcagctgcgctgaccaggcaag |
140 |
Q |
| |
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||||||||||||||| | |||| ||||| ||||||||| ||||| |||| ||||||||| ||| |||||| |||||| | || || ||||| |
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| T |
37851533 |
tgggctagatctgtaatgatggagacaggaaaaattgagaacattgttgatccataccttgtaagtgcatttcctaattcaataacactagtcaagcaag |
37851632 |
T |
|
| Q |
141 |
tcactacaatgtttttattggcattgcaatgtacagagaaggatttacgaaagagaccaatcatgaaagatgttat |
216 |
Q |
| |
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||| | || || ||| ||||||||| ||||| |||||||||||| ||||||||| ||| |||||||| |||||| |
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| T |
37851633 |
tcaatgcagtgctttcattggcattacaatgcacagagaaggatccacgaaagaggacaaccatgaaagttgttat |
37851708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 36866877 - 36867062
Alignment:
| Q |
33 |
tagtgagctgggctagatctgtatggctggaaacaggcaaaattgagtccattgctgattcataccttgcaagaagatttcccaattcagctgcgctgac |
132 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||||| ||| ||||| ||| | ||||||||||| |||||||||||||| | || | |
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| T |
36866877 |
tagtgacctgggctagatctgtattgctggaaacaggcaaaatcgagaagattgccgatccctaccttgcaagtgcatttcccaattcagaagtactagc |
36866976 |
T |
|
| Q |
133 |
caggcaagtcactacaatgtttttattggcattgcaatgtacagagaaggatttacgaaagagaccaatcatgaaagatgttattg |
218 |
Q |
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|||||||| | || || ||| ||||||||| ||||| |||||||||||| ||||| ||| |||| ||||||||||||||||| |
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| T |
36866977 |
tgagcaagtcaatgcagtgctttcattggcattacaatgcacagagaaggatccacgaaggaggccaaccatgaaagatgttattg |
36867062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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