View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9530_low_10 (Length: 303)
Name: NF9530_low_10
Description: NF9530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9530_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 35425149 - 35425446
Alignment:
| Q |
1 |
atatgtgtatgaatgaaatatatcgtgaaccatgtcccggatagtatttattgcatcctaagaatcagtctcacaaaccacgtttcaacacatttggtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35425149 |
atatgtgtatgaatgaaatatatcgtgaaccatgtcccggatagtatttactgcatcctaagaatcagtctcacaaaccacgtttcaacacatttggcct |
35425248 |
T |
|
| Q |
101 |
ttaaattaacactaatttagnnnnnnnnaatacaaccattttctattatttaaaacgaaatattgatgacaaaaaactagatattgtttgctaaacgtat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35425249 |
ttaaattaacactaatttagttttttt-aatacaaccattttctattatttaaaacgaaatattgatgacaaaaaactagatattgtttgctaaaagtat |
35425347 |
T |
|
| Q |
201 |
tagcaaaataaaatttaactttttcctgaatttttattacttataatacttaatattgaannnnnnnnnatgaaatgtaaacaattagtataatctacc |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
35425348 |
tagcaaaataaaatttaactttttcctaaatttttattacttataatacttaatattgatttttcttttatgaaatgtaaacaattagtataatgtacc |
35425446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University