View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9530_low_11 (Length: 296)

Name: NF9530_low_11
Description: NF9530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9530_low_11
NF9530_low_11
[»] chr4 (5 HSPs)
chr4 (22-273)||(48911929-48912180)
chr4 (44-221)||(48962657-48962834)
chr4 (47-239)||(48965695-48965887)
chr4 (42-205)||(48958508-48958671)
chr4 (26-174)||(48951579-48951727)
[»] scaffold0536 (3 HSPs)
scaffold0536 (26-264)||(6104-6342)
scaffold0536 (42-243)||(10109-10310)
scaffold0536 (80-158)||(1164-1242)
[»] chr6 (1 HSPs)
chr6 (26-239)||(12589787-12590000)
[»] chr5 (2 HSPs)
chr5 (59-218)||(28385712-28385871)
chr5 (97-218)||(12541101-12541222)
[»] chr2 (3 HSPs)
chr2 (47-206)||(13440566-13440725)
chr2 (47-205)||(13448729-13448887)
chr2 (41-205)||(13455194-13455358)
[»] chr8 (1 HSPs)
chr8 (100-216)||(12641122-12641238)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 48912180 - 48911929
Alignment:
Q  22 caccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||| |||||    
T  48912180 caccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctcagccttctcttgaatagttctgcga 48912081  T
Q  122 ataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912080 ataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaa 48911981  T
Q  222 ggattccgttacttttgaaaactgtctcaagaagcgcttccaacaatttact 273  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48911980 ggattccgttacttttgaaaactgtctcaagaagcgcttccaataatttact 48911929  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 48962657 - 48962834
Alignment:
Q  44 ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagat 143  Q
    |||||||| | || |||||| || || | |||||||||||| | ||| || | ||||||||||||||  | | |||||||||||||| ||||||| ||||    
T  48962657 ttaagccaccacagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagat 48962756  T
Q  144 gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaa 221  Q
    ||||||| |||||||  || ||||||||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  48962757 gccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaa 48962834  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 48965695 - 48965887
Alignment:
Q  47 agccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgcc 146  Q
    ||||||||||||||||| ||||| |||||  ||||||||| ||| |||| |||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  48965695 agccaactcaaacactcttgcacgctcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgcc 48965794  T
Q  147 aagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttga 239  Q
    |||| || ||||  ||  |  || | || | ||  || |||||||| |||||||| ||||| ||||||||||||| || ||| ||||||||||    
T  48965795 aagccttatgacccgtgctactcacataatatttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga 48965887  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 48958508 - 48958671
Alignment:
Q  42 agttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaag 141  Q
    |||| |||||||||| |||  | |||||||| |||||| |||| | ||| |||| || |||||||||||| |||  ||||||||||||||| ||||||||    
T  48958508 agttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaag 48958607  T
Q  142 atgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 205  Q
    ||||||| | |||||||  ||  |||||| ||||||||||||  |||||||||| |||||||||    
T  48958608 atgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttca 48958671  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 48951579 - 48951727
Alignment:
Q  26 gagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataa 125  Q
    ||||||||||| |||||||| | |||| ||||| |||  ||||| ||||   | || ||  ||||||| | ||| ||||||||| ||||| |||||| ||    
T  48951579 gagttatcttgcttcgagttcaaccaattcaaatacttttgcacgctcatttcgctttcccctcctctatttgccttctcttgagtagttttgcgaacaa 48951678  T
Q  126 gagaagctggaccaagatgccaagctttgtgacaagtagttttctcgta 174  Q
    |||| || ||||||||||||||||| |||||||   | |||||||||||    
T  48951679 gagaggccggaccaagatgccaagccttgtgaccgatggttttctcgta 48951727  T

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Target: scaffold0536 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 6342 - 6104
Alignment:
Q  26 gagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataa 125  Q
    ||||||||| | |||||||  |||||||||| |||||| ||||||||||||||||| | || ||| ||||||||||| ||||||| |||| | |||||||    
T  6342 gagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacactttgttgtcccctctgtgctttttcttgaacagttctacgaataa 6243  T
Q  126 gagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggat 225  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |||    
T  6242 gagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttcagaaaaattgttaacaatgat 6143  T
Q  226 tccgttacttttgaaaactgtctcaagaagcgcttccaa 264  Q
    |||||| ||||||||||| ||||| | ||||||||||||    
T  6142 tccgttgcttttgaaaaccgtctccaaaagcgcttccaa 6104  T

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Target: scaffold0536; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 10310 - 10109
Alignment:
Q  42 agttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaag 141  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||||||||||| |||| | |||| |||| ||||||||| |||    
T  10310 agttaagccaactcagacactcatgcacactcacaacactctgttctcctctctctgttttctcttgaacagttctacgaacaagataagctggactaag 10211  T
Q  142 atgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaa 241  Q
    |||||||||||| ||||  |||||||||| |||||||||||| | || || ||||||||||||  ||||||| ||||||||||| || | ||||||||||    
T  10210 atgccaagctttctgacccgtagttttcttgtagtgttcgatgtgctatttaccgtcaagttctacaaaattattgacaaggatcccttgacttttgaaa 10111  T
Q  242 ac 243  Q
    ||    
T  10110 ac 10109  T

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Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 1242 - 1164
Alignment:
Q  80 ctctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgac 158  Q
    |||| |||||| || | ||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||||| |||||||    
T  1242 ctcttttctcccctatttgctttctcttgagtggttttgcgaacaagagatgctgggccaagaagccaagccttgtgac 1164  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 12590000 - 12589787
Alignment:
Q  26 gagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataa 125  Q
    ||||||||| | |||||||| |||||||||| |||||| |||||  ||||||||||||| | ||| || | |||||||||||||| |||| || ||||||    
T  12590000 gagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataa 12589901  T
Q  126 gagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggat 225  Q
    ||||||||||||||||||||||||| |||||||  || |||||||| ||||||| || | ||||||  || ||||||||||| || ||||| |||| ||     
T  12589900 gagaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgag 12589801  T
Q  226 tccgttacttttga 239  Q
    ||| ||||||||||    
T  12589800 tccattacttttga 12589787  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 28385712 - 28385871
Alignment:
Q  59 cactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgac 158  Q
    ||||||||| | |||||| ||||||  | |||  ||| |||||||||||||| |||| | |||||||  |||| |||||||||||||||||| |||||||    
T  28385712 cactcgtgctcgctcacatcactcttgtttcccttctctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgac 28385811  T
Q  159 aagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttga 218  Q
      || |||||||||||||||| || | ||||||| || ||||||||| |||| |||||||    
T  28385812 ccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttga 28385871  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 12541101 - 12541222
Alignment:
Q  97 tgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccg 196  Q
    |||||||||||||||  || |  |||||| ||||| |||||||||||||||||| |||||||  || |||||||||||||||| || | ||||||| ||     
T  12541101 tgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctcca 12541200  T
Q  197 tcaagttcagcaaaattgttga 218  Q
    ||||||||| |||| |||||||    
T  12541201 tcaagttcaacaaagttgttga 12541222  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 13440566 - 13440725
Alignment:
Q  47 agccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgcc 146  Q
    ||||||||||  || |||||||   ||||| ||| ||| | ||| |||| ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  13440566 agccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgcc 13440665  T
Q  147 aagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcag 206  Q
    || | |||||||  || |||||||| ||||||| |||  ||||||| |||||||||||||    
T  13440666 aaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcag 13440725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 13448729 - 13448887
Alignment:
Q  47 agccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgcc 146  Q
    ||||||||||  | |||||||||| ||||| ||| ||| | ||| |||| || ||||||||||  |||| ||||||||||||||| ||||||||||||||    
T  13448729 agccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgcc 13448828  T
Q  147 aagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 205  Q
    || | |||||||  || | ||||||||||||||  ||  ||||||| || |||||||||    
T  13448829 aaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttca 13448887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 13455194 - 13455358
Alignment:
Q  41 gagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaa 140  Q
    |||| |||||| ||||  |||||||| ||| |||||| |  ||| | ||| |||| || ||| |||||||  ||| ||| ||||||||||| ||||||||    
T  13455194 gagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccctctctgatttttcttgaacggttctgcaaataagagaagttggaccaa 13455293  T
Q  141 gatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 205  Q
     ||||||| | |||||||  || ||||| |||||||||| |||  ||||||| || |||| ||||    
T  13455294 tatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattca 13455358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 12641238 - 12641122
Alignment:
Q  100 tttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtca 199  Q
    |||||||| || |||| ||||||||||| ||| |||||||||||||||||| |||| ||   | |||||||| ||||||| |||  | |||||||| |||    
T  12641238 tttctcttcaaaagttttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatca 12641139  T
Q  200 agttcagcaaaattgtt 216  Q
    |||||| |||| |||||    
T  12641138 agttcaacaaagttgtt 12641122  T

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