View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9530_low_12 (Length: 265)

Name: NF9530_low_12
Description: NF9530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9530_low_12
NF9530_low_12
[»] chr4 (5 HSPs)
chr4 (1-252)||(48912157-48912408)
chr4 (14-248)||(48958264-48958498)
chr4 (14-255)||(48965442-48965680)
chr4 (94-248)||(48961413-48961567)
chr4 (73-200)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (2-248)||(6324-6570)
scaffold0536 (26-252)||(10330-10556)
[»] chr6 (2 HSPs)
chr6 (1-248)||(12589981-12590231)
chr6 (1-202)||(12483276-12483477)
[»] chr2 (3 HSPs)
chr2 (15-202)||(13440363-13440550)
chr2 (53-252)||(13448479-13448675)
chr2 (112-199)||(13455000-13455087)
[»] chr5 (2 HSPs)
chr5 (15-216)||(28385483-28385684)
chr5 (10-202)||(12540848-12541040)
[»] chr7 (1 HSPs)
chr7 (8-216)||(3417349-3417557)
[»] chr8 (1 HSPs)
chr8 (61-202)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 48912157 - 48912408
Alignment:
Q  1 aactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912157 aactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcat 48912256  T
Q  101 cgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912257 cgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagaatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagag 48912356  T
Q  201 aattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912357 aattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 48912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 48958498 - 48958264
Alignment:
Q  14 ataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt 113  Q
    ||||||| ||| ||||||||||||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  48958498 ataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaatt 48958399  T
Q  114 catatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaag 213  Q
      |||||||||||||||| |||||| |||  ||  | || | |||||||||||||| ||| |||||||| || || || ||||||||||  || ||||||    
T  48958398 tgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaag 48958299  T
Q  214 aagaaggctatgattattaagggttgggctccaca 248  Q
    ||||| | | |||| |||| ||| ||||| |||||    
T  48958298 aagaaaggtttgatcattagggggtgggccccaca 48958264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 48965680 - 48965442
Alignment:
Q  14 ataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt 113  Q
    ||||||| ||| |||||||| ||||||||||||  |||| || |  ||||||||| ||||||||||||||||| |  || ||||||||| |||| || ||    
T  48965680 ataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattt 48965581  T
Q  114 catatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaag 213  Q
     ||||||||| ||||    || ||  |||  ||| |||| | ||||||||||||  |||| ||||| |||||||| || ||||||||||  || |||       
T  48965580 tatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagggattcgaagagagaaacattgga--- 48965484  T
Q  214 aagaaggctatgattattaagggttgggctccacaggttctg 255  Q
    ||||||| | ||||||||| |||||||||||| |||||||||    
T  48965483 aagaagggtttgattattaggggttgggctccgcaggttctg 48965442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 48961567 - 48961413
Alignment:
Q  94 gaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttg 193  Q
    ||||||||| ||||||||||  |||||||||||||||| || ||| |||  | | |||| |  |||||||||||||| || |||||||| || || ||||    
T  48961567 gaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatttg 48961468  T
Q  194 aagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 248  Q
    |||||||||  || | ||||||||||| | |||| |||||||| ||||| |||||    
T  48961467 aagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 48951526 - 48951399
Alignment:
Q  73 tatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaa 172  Q
    |||||||||||  ||| ||| |||| |||  || | ||||||||||||||||| || ||||||||  ||| |||| | || | ||| |||||||| ||||    
T  48951526 tatgagattgcaagcgcgatagaagaatcaggttatgaattcatatgggttgtcccagaaaagaaggggaaggagaacgagagtgatgaggagaaggaaa 48951427  T
Q  173 aatggttgccaaaggggtttgaagagag 200  Q
    ||||||| || | || ||||||||||||    
T  48951426 aatggttacccagggagtttgaagagag 48951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 6324 - 6570
Alignment:
Q  2 actcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatc 101  Q
    ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  |||||||||||||||| |||||||| || ||||| ||||||||    
T  6324 actcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatc 6423  T
Q  102 gagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagaga 201  Q
    | ||||| |||||||||||||||||||||| |||||| |||  ||  |||| | |||||||||||||| |||||||||||||||||| || |||||||||    
T  6424 gggtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaaggaaaatggttgccaaagggattcgaagagaga 6523  T
Q  202 attatcggaaagaagaaggctatgattattaagggttgggctccaca 248  Q
    | ||||||||||||||||| | ||||||||| |||||||||||||||    
T  6524 aatatcggaaagaagaagggtttgattattaggggttgggctccaca 6570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 10330 - 10556
Alignment:
Q  26 tgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgt 125  Q
    ||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| || | ||||||||| || |||||||  |||| |||||    
T  10330 tgtacatttgctttggaagcctatgttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgt 10429  T
Q  126 tcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatg 225  Q
    |||||| |||||| |||  ||| |||| | | |||||||||||||||||||| | || || || |||||||| ||| |||| | ||||||||||| | ||    
T  10430 tcctgagaagaaagggaaagagaatgagagtcaagaggagaaagaaaaatggctaccgaaaggatttgaagaaagagttattgcaaagaagaagggtttg 10529  T
Q  226 attattaagggttgggctccacaggtt 252  Q
    ||||||||||||||||| || ||||||    
T  10530 attattaagggttgggcccctcaggtt 10556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 12589981 - 12590231
Alignment:
Q  1 aactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcat 100  Q
    |||||||| | ||||||||| ||| |||||||||||||||| |||  |||  |||| || ||||||||||||||||||||| |||| || || |||||||    
T  12589981 aactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcat 12590080  T
Q  101 cgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagag 200  Q
    |  | ||||||||| |||||||| |||| || || ||| ||| |||  |||| | ||| ||||| ||| ||||||||||||| |  || |||||||||||    
T  12590081 caggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatggttgcctagtggatttgaagagag 12590180  T
Q  201 aattatcg---gaaagaagaaggctatgattattaagggttgggctccaca 248  Q
    ||  || |   |||||||||||| | |||| |||| ||||||||| |||||    
T  12590181 aaacattgggagaaagaagaagggtttgatcattaggggttgggccccaca 12590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12483276 - 12483477
Alignment:
Q  1 aactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcat 100  Q
    ||||| || ||||| || || ||| |||||||||||||||| |||| |||  |||| || |||||||| ||||| || ||| | ||||| || |||||||    
T  12483276 aactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcat 12483375  T
Q  101 cgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagag 200  Q
    || || |  |||||||||||||||||||||| || ||| ||| |||  |||| |  || |||||||||||||| |||||||| ||||| ||||| |||||    
T  12483376 cgggtaaaaaattcatatgggttgttcctgagaaaaaagggaaggaagatgagagcgatgaggagaaagaaaagtggttgccgaagggatttgaggagag 12483475  T
Q  201 aa 202  Q
    ||    
T  12483476 aa 12483477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 13440550 - 13440363
Alignment:
Q  15 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 114  Q
    |||||||||| |||||||||| |||||||||       |||| || ||||||||||| |||||||| |||||||  || |||||||| ||||||  ||||    
T  13440550 taactcggtgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattc 13440451  T
Q  115 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 202  Q
    ||||||||||||||||| |||||| |||  ||  |||| | ||| || ||||||||||| |||||||||||||| || ||||||||||    
T  13440450 atatgggttgttcctgagaagaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaa 13440363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 252
Target Start/End: Complemental strand, 13448675 - 13448479
Alignment:
Q  53 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatga 152  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| |||||| |||  ||  ||||    
T  13448675 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 13448576  T
Q  153 caatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 252  Q
     |  ||||| ||||||||||| ||||| || ||||| ||||||||||||| ||||||   |||||||| | |||| |||| ||||||||| |||||||||    
T  13448575 gagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggtt 13448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 13455087 - 13455000
Alignment:
Q  112 ttcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagaga 199  Q
    ||||||||||||||||| || |||||| |||  ||  |||| |  |||||||||||| |||| |||||||| ||||| ||||||||||    
T  13455087 ttcatatgggttgttccggagaagaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagaga 13455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 28385684 - 28385483
Alignment:
Q  15 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 114  Q
    |||||| || ||||||||||| |||||||||  |   ||||| || ||||||||||| ||||||||||| ||||   | ||||||||  |||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  115 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaaga 214  Q
    ||||||||||||||||| |||||| |||  ||  |||| |  ||||| ||||||||||| ||| |||||||||| ||||| |||||||  || |||||||    
T  28385584 atatgggttgttcctgagaagaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaaga 28385485  T
Q  215 ag 216  Q
    ||    
T  28385484 ag 28385483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 12541040 - 12540848
Alignment:
Q  10 caagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacg 109  Q
    |||| |||||| |||||||||||||| |||||||||  |  |||||| |  || |||||||| ||||||||||| || |   | |||| |  | |||||     
T  12541040 caagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacc 12540941  T
Q  110 aattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 202  Q
     ||||||||||||||||||||| |||| | |||  ||  |||| | |||||| ||||||||||| ||| |||| ||||| ||||| |||||||    
T  12540940 cattcatatgggttgttcctgagaagagagggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaa 12540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 3417349 - 3417557
Alignment:
Q  8 aacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtca 107  Q
    |||||| |||||| ||| |||||||||| |||||||||  |    |||| || ||||||||||| ||||||||||| | ||  || ||||||||| ||||    
T  3417349 aacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtca 3417448  T
Q  108 cgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatc 207  Q
    |  ||||||||||||||||| ||| |||||| | |  ||  |||| || ||||| ||||||||||| |||||||| ||||| ||||| |||||||  ||     
T  3417449 cccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggatttgaggagagaaacatt 3417548  T
Q  208 ggaaagaag 216  Q
    |||||||||    
T  3417549 ggaaagaag 3417557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 12641353 - 12641494
Alignment:
Q  61 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaag 160  Q
    |||||||||||||| ||||||||| |||| || |||   ||  ||||||||||  |||||||||||||||| |||||| |||   |  |||| | |||||    
T  12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag 12641452  T
Q  161 aggagaaagaaaaatggttgccaaaggggtttgaagagagaa 202  Q
    ||||||||||||| |||||||| || || || ||||||||||    
T  12641453 aggagaaagaaaagtggttgcctaaaggattcgaagagagaa 12641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University