View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9530_low_13 (Length: 237)
Name: NF9530_low_13
Description: NF9530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9530_low_13 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35370 - 35590
Alignment:
| Q |
1 |
gatcaaagtaactcattgccgagtatcctcctcctcggaaacagtaagttcagtagccgagccatcggatataactgtttcacattagcctccagaatgc |
100 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
35370 |
gatcaaagtaacacatttccgagtatcctcctcctcggagacagtaagttcagtagccgagccatcggatacaactgtttcacaatagcctccagaatgc |
35469 |
T |
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| Q |
101 |
ctactcttagccattatttattgcaacgaccaaaatcaacaatcaatcaatcactaaactcaaacagccccgcaaattagatgtcctagagagagggaat |
200 |
Q |
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|||||||||||||||||||||| | ||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35470 |
ctactcttagccattatttattacgacgaccacaatcaaaaatcaaccaatcactaaattcaaacagccccgcaaattagatgtcctagagagagggaat |
35569 |
T |
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| Q |
201 |
gaaaaaataaattgaattaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35570 |
gaaaaaataaattgaattaac |
35590 |
T |
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