View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9530_low_4 (Length: 596)
Name: NF9530_low_4
Description: NF9530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9530_low_4 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 34636 - 35222
Alignment:
| Q |
8 |
atgagatggacatcagtcttaggtggattataactcaacgcatttgaaaatgtaagcctcacatcagcagcaaattccaatgggcctgtgtatgatcctt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34636 |
atgatatggacatcagtcttaggtggattataactcaacgcatttgaaaatgtaagcctcacatcagcagcaaattccaatgggcctgtgtatgatcctt |
34735 |
T |
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| Q |
108 |
tagcaatcttgttttgtactgttcccaaatccataggatgcgttatgacactgaaatagtcgggaatattcaacttaaccacatccacaggggcattaaa |
207 |
Q |
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| T |
34736 |
tagcaatcttgttttgtactgttcccaaatccataggatgcgttatcacactgaaatagtcaggaatattcaacttaaccacatccacaggggcattaaa |
34835 |
T |
|
| Q |
208 |
aacccaaccaaatttgtgcttcatcaacagtttcaatagtgactcgcaatctttcatcaacagtgaatttgcagttccaggcaaacaagtttgtgcctga |
307 |
Q |
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| T |
34836 |
aacccaaccaaatttgtgcttcatcaacagtttcaatagtgactcgcaatctttcatcaacagtgaatttgcagttccaggcaaacaagttcgtgcctga |
34935 |
T |
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| Q |
308 |
gtctcaaactttccacaagtgcctctattccatccacgaggcttctgaatctgacctaacggtttcactttattccctggtactgatttcctcgcggttt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
34936 |
gtctcaaactttccacaagtgcctctattccatccacgaggcttctgaatctgacctaacggtttcaatttattccctggtactgatttcctcgaggttt |
35035 |
T |
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| Q |
408 |
ctatggatgttttcaatgtgtttccttgtactgaagaagatattgattgttttctcgaggcctctatgaatggtttcacttgattcccttgaacggaagc |
507 |
Q |
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| T |
35036 |
ctatggatgttttcaatgtgtttccttgtactgaagaagatattgattgttttctcgaggtctctatgaatggtttcacttgattcccttgaacggaagc |
35135 |
T |
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| Q |
508 |
agatattgaaggttttctcaagttgtctatttgaccacggttgatattaatatcactagaagatgacaaagtaacactatttctctt |
594 |
Q |
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| T |
35136 |
agatattgaaggttttctcaagttgtctatttgaccacggttgatattaatatcactagaagacgacaaagtaacaccatttctctt |
35222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 46984 - 47302
Alignment:
| Q |
29 |
ggtggattataactcaacgcatttgaaaatgtaagcctcacatcagcagcaaattccaatgggcctgtgtatgatcctttagcaatcttgttttgtactg |
128 |
Q |
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||||||||||| ||| ||||| ||||| ||||||||||| ||| ||||||||||||||||| | | ||| | || | | |||||| ||| || || |
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| T |
46984 |
ggtggattataggtcattgcattcgaaaacgtaagcctcacgtcaccagcaaattccaatgggtcagagtacgctctggcatcgatcttgctttttattg |
47083 |
T |
|
| Q |
129 |
ttcccaaatccataggatgcgttatgacactgaaatagtcgggaatattcaacttaaccacatccacaggggcattaaaaacccaaccaaatttgtgctt |
228 |
Q |
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| T |
47084 |
ttcccaaatccataggttccttaatgatagtgaaataatcaggaaggttcaacttgactacatccacaggggtgttgaaaacccaaccatactggtgagt |
47183 |
T |
|
| Q |
229 |
catcaacagtttcaatagtgactcgcaatctttcatcaacagtgaatttgcagttccaggcaaacaagtttgtgcctgagtctcaaactttccacaagtg |
328 |
Q |
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||||||| || |||| |||||||| |||||||||||||||| |||||||| | |||| ||| ||| ||| || ||| ||||||||||||| ||||| |
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| T |
47184 |
catcaaccgtgtcaaaagtgactcacaatctttcatcaacaaagaatttgccatggtaggcgaacgagtctgtaccggagcctcaaactttccagaagtg |
47283 |
T |
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| Q |
329 |
cctctattccatccacgag |
347 |
Q |
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|| | ||||||||| |||| |
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| T |
47284 |
ccccgattccatccgcgag |
47302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 34066494 - 34066404
Alignment:
| Q |
131 |
cccaaatccataggatgcgttatgacactgaaatagtcgggaatattcaacttaaccacatccacaggggcattaaaaacccaaccaaatt |
221 |
Q |
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||||||||||| ||||| | |||||| ||||||| || ||||| ||||| ||||| ||||| || || ||||||||||||||||||||| |
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| T |
34066494 |
cccaaatccattggatgtttgatgacattgaaataatccggaatgttcaatttaacaacatcgactggttcattaaaaacccaaccaaatt |
34066404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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