View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9530_low_6 (Length: 431)

Name: NF9530_low_6
Description: NF9530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9530_low_6
NF9530_low_6
[»] chr8 (1 HSPs)
chr8 (18-415)||(25937654-25938051)
[»] chr1 (1 HSPs)
chr1 (250-415)||(30092969-30093134)
[»] chr7 (2 HSPs)
chr7 (238-392)||(28842548-28842702)
chr7 (248-391)||(5777218-5777364)
[»] scaffold0113 (1 HSPs)
scaffold0113 (248-414)||(3251-3417)
[»] chr2 (3 HSPs)
chr2 (292-415)||(38877083-38877206)
chr2 (248-281)||(38872789-38872822)
chr2 (248-281)||(38875939-38875972)
[»] chr4 (2 HSPs)
chr4 (296-376)||(11115111-11115191)
chr4 (296-389)||(23285254-23285346)
[»] chr3 (1 HSPs)
chr3 (258-312)||(22525231-22525285)
[»] chr6 (1 HSPs)
chr6 (370-415)||(1511287-1511332)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 25937654 - 25938051
Alignment:
Q  18 ttcttccaggaaagtacaattatacgaatacttcaaagatatggtaggaattcaagaacatgatacttcaaatnnnnnnntattcacatgtcaatattga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  25937654 ttcttccaggaaagtacaattatacgaatacttcaaagatatggtaggaattcaagaacatgatacttcaaataaaaaaatattcacatgtcaatattga 25937753  T
Q  118 aaaacatttttaaggaccaaaacttatccaacacttaagtttaatagtattaatatagaattgtgaggtgatatacaaaatatataaattgtagtaaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25937754 aaaacatttttaaggaccaaaacttatccaacacttaagtttaatagtattaatatagaattgtgaggtgatatacaaaatatataaattgtagtaaaca 25937853  T
Q  218 aacattgttttattacacaggcaaaagttaattctctcattgatcataataataattgttggaactatcacttgattaattattattttgatcaagacac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25937854 aacattgttttattacacaggcaaaagttaattctctcattgatcataataataattgttggaactatcacttgattaattattattttgatcaagacac 25937953  T
Q  318 tgtccaggaaattcttaagactcctctgtttcgtcaaattgaagaggataatttaatttggagagttgagaaaaatggacaatattctgttaaaagtg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25937954 tgtccaggaaattcttaagactcctctgtttcgtcaaattgaagaggataatttaatttggagagttgagaaaaatggacaatattctgttaaaagtg 25938051  T

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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 250 - 415
Target Start/End: Complemental strand, 30093134 - 30092969
Alignment:
Q  250 tctctcattgatcataataataattgttggaactatcacttgattaattattattttgatcaagacactgtccaggaaattcttaagactcctctgtttc 349  Q
    |||||| ||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  |||    
T  30093134 tctctcgttgatcacaataataatagttggaactatcatttgattaattactattttgatcaagacactgtccaggaaattcgtaagactcctcttgttc 30093035  T
Q  350 gtcaaattgaagaggataatttaatttggagagttgagaaaaatggacaatattctgttaaaagtg 415  Q
    ||||| | ||||||||||| ||||||| |||||||||||||||| | || ||| |||||| |||||    
T  30093034 gtcaagtcgaagaggataaattaatttagagagttgagaaaaataggcattatcctgttagaagtg 30092969  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 392
Target Start/End: Complemental strand, 28842702 - 28842548
Alignment:
Q  238 gcaaaagttaattctctcattgatcataataataattgttggaactatcacttgattaattattattttgatcaagacactgtccaggaaattcttaaga 337  Q
    |||| |||| |||||||||||||||| |||||||||  |||||| ||||| ||||||||||| |||||||||||| ||| | |  || ||||||||||      
T  28842702 gcaagagttcattctctcattgatcacaataataataattggaattatcatttgattaattactattttgatcaacacattatttagaaaattcttaaag 28842603  T
Q  338 ctcctctgtttcgtcaaattgaagaggataatttaatttggagagttgagaaaaa 392  Q
    ||| ||  ||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  28842602 ctcttccttttcgtcaagttgaagaggataaattaatttgaagagttgagaaaaa 28842548  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 391
Target Start/End: Original strand, 5777218 - 5777364
Alignment:
Q  248 attctctcattgatcataa---taataattgttggaactatcacttgattaattattattttgatcaagacactgtccaggaaattcttaagactcctct 344  Q
    |||||||||||||||||||   |||||||| ||||||| || |  | ||||||||||||||||||||||| | ||| || |||||||||| |||||||||    
T  5777218 attctctcattgatcataataataataatttttggaacgataatataattaattattattttgatcaagaaattgttcatgaaattcttaggactcctct 5777317  T
Q  345 gtttcgtcaaattgaagaggataatttaatttggagagttgagaaaa 391  Q
     || |||||| | |||||||| |  ||  ||||||||||||||||||    
T  5777318 tttccgtcaagtcgaagaggacacattggtttggagagttgagaaaa 5777364  T

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Target: scaffold0113 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 3417 - 3251
Alignment:
Q  248 attctctcattgatcataataataattgttggaactatcacttgattaattattattttgatcaagacactgtccaggaaattcttaagactcctctgtt 347  Q
    ||||||||||||||||||| ||||| |||||| | ||| |  | |||||||||||| |||||||||| ||||| |||||||||| ||  |||||||| ||    
T  3417 attctctcattgatcataacaataactgttggtattataatataattaattattatcttgatcaagaaactgttcaggaaattcatagcactcctctttt 3318  T
Q  348 tcgtcaaattgaagaggataatttaatttggagagttgagaaaaatggacaatattctgttaaaagt 414  Q
    ||||||| |  ||||||| || ||  |||||||||||||||||||||| || || ||||||| ||||    
T  3317 tcgtcaagtcaaagaggacaaattggtttggagagttgagaaaaatgggcattactctgttagaagt 3251  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 38877083 - 38877206
Alignment:
Q  292 attaattattattttgatcaagacactgtccaggaaattcttaagactcctctgtttcgtcaaattgaagaggataatttaatttggagagttgagaaaa 391  Q
    |||||||||||||||||||||||  || | ||| ||||||||| ||||||||| ||||||| | |  | ||||| |  ||  ||||||||||||||||||    
T  38877083 attaattattattttgatcaagaatctattcagaaaattcttaggactcctctttttcgtctagtcaaggaggacagcttggtttggagagttgagaaaa 38877182  T
Q  392 atggacaatattctgttaaaagtg 415  Q
    ||||| | || ||||||| |||||    
T  38877183 atggatattactctgttagaagtg 38877206  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 38872789 - 38872822
Alignment:
Q  248 attctctcattgatcataataataattgttggaa 281  Q
    ||||||||||||||||||||||||||||||||||    
T  38872789 attctctcattgatcataataataattgttggaa 38872822  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 38875939 - 38875972
Alignment:
Q  248 attctctcattgatcataataataattgttggaa 281  Q
    ||||||||||||||||||||||||||||||||||    
T  38875939 attctctcattgatcataataataattgttggaa 38875972  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 11115111 - 11115191
Alignment:
Q  296 attattattttgatcaagacactgtccaggaaattcttaagactcctctgtttcgtcaaattgaagaggataatttaattt 376  Q
    ||||||||||||||||||  ||||||||||||||||| || ||||||||  | |||||| ||||||| ||||  |||||||    
T  11115111 attattattttgatcaagttactgtccaggaaattctcaacactcctcttatccgtcaagttgaagaagataggttaattt 11115191  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 23285254 - 23285346
Alignment:
Q  296 attattattttgatcaagacactgtccaggaaattcttaagactcctctgtttcgtcaaattgaagaggataatttaatttggagagttgagaa 389  Q
    ||||||| |||||||||   |||||||| |||||||| |||||||||||  ||||| || ||||||||||||  |||| ||||||| |||||||    
T  23285254 attattactttgatcaaagtactgtccaagaaattctcaagactcctctcattcgt-aagttgaagaggatacgttaaattggagaattgagaa 23285346  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 22525285 - 22525231
Alignment:
Q  258 tgatcataataataattgttggaactatcacttgattaattattattttgatcaa 312  Q
    |||||||||||| | |  |||||||||||| ||||||| ||||||||||||||||    
T  22525285 tgatcataataacagtacttggaactatcatttgattagttattattttgatcaa 22525231  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 1511287 - 1511332
Alignment:
Q  370 ttaatttggagagttgagaaaaatggacaatattctgttaaaagtg 415  Q
    |||||||||||| | ||||| |||||||||||||| ||||||||||    
T  1511287 ttaatttggagattagagaagaatggacaatattcagttaaaagtg 1511332  T

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