View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9530_low_9 (Length: 348)
Name: NF9530_low_9
Description: NF9530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9530_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 64 - 339
Target Start/End: Original strand, 32325834 - 32326109
Alignment:
| Q |
64 |
cacgtcattaaagttaaaacgacgtgaaaagcaaaatactttaggtttaaaagagtgaaatgaaaaattgaagtgataatctctgccattgcgcgcagaa |
163 |
Q |
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| T |
32325834 |
cacgtcattaaagttaaaacgacgtgaaaagcaaaatactttaggtttaaaagagtgaaatgaaaaattgaagtgataatctctgcaattgcgcgaagaa |
32325933 |
T |
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| Q |
164 |
gnnnnnnnnccgaagtaattaagaatgcatgtaatgtaatgataagaatgacttacaaaggccaatgagaggaggaagatcagcaagtttggcataacta |
263 |
Q |
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| T |
32325934 |
gaaaaaaaaccgaagtaattaagaatgaatgtaatgtaataataagaatgacttacaaaggccaatgagaggaggaagattagcaagtttggcataacta |
32326033 |
T |
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| Q |
264 |
atgccttgaggaatggcaagactagcaatggtgagaccagcaattaagtcagagaaaaataatctcaaagaataat |
339 |
Q |
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| T |
32326034 |
atgccttgaggaatggcaagactagcaatggtgagaccagcaattaagtcagagaaaaataatctcaaagaataat |
32326109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 38221210 - 38221283
Alignment:
| Q |
234 |
ggaggaagatcagcaagtttggcataactaatgccttgaggaatggcaagactagcaatggtgagaccagcaat |
307 |
Q |
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| T |
38221210 |
ggaggaaggttagcaagctttgcataactaatgccttgaggaatagccaaactagcaatggtgatcccagcaat |
38221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 277
Target Start/End: Complemental strand, 31744672 - 31744641
Alignment:
| Q |
246 |
gcaagtttggcataactaatgccttgaggaat |
277 |
Q |
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| T |
31744672 |
gcaagtttggcataactaatgccttgaggaat |
31744641 |
T |
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