View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9531_low_1 (Length: 708)
Name: NF9531_low_1
Description: NF9531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9531_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 66 - 698
Target Start/End: Complemental strand, 53676596 - 53675957
Alignment:
| Q |
66 |
taaggttagccgaatagaagcaattaggacacgatctttataggtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
165 |
Q |
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| T |
53676596 |
taaggttagccgaataatagcaattaggacacgatctttatatgtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
53676497 |
T |
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| Q |
166 |
tgtaatttgtaaactttatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtcacacttaaccctctttgtagaagctaagaa |
265 |
Q |
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| T |
53676496 |
tgtaatttgtaaactatatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtgacacttaaacctctttgtagaagctaagaa |
53676397 |
T |
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| Q |
266 |
acacgcagtgaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcacagtccccttgcaca |
365 |
Q |
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| T |
53676396 |
acacgcagtcaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcacagtccccttgcaca |
53676297 |
T |
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| Q |
366 |
aaataaaacctctaatgctgttgtgtatgtcaaaaataatgaaggctatgtggcaaccttgcaaggtttggtagttagagacagaaatattttccacttt |
465 |
Q |
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| T |
53676296 |
aaataaaacctctaatgctgttgtgtatgtcaaaaataatgaaggctatgtggcaaccttgcaaggtttg--atttagagacagaaatattttccacttt |
53676199 |
T |
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| Q |
466 |
atcatccatcagaaaaagagaaaacagttagtgtcctctcaaagtttcattgatgataaagtgatgactgtaactannnnnnncaagaattgcaaatagt |
565 |
Q |
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| T |
53676198 |
atcatccatcagaaaaagagaaaacagttagtgtcctctcaaagtttcattgatgataaagtgatgaatgtaactatttttttcaagaattgcaaatagt |
53676099 |
T |
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| Q |
566 |
ccaacaagctttcctaccaactggaagt---------aaaactaaaaataataaaggcacaaaattttgtaaaaaggaggttcatttttggcttatataa |
656 |
Q |
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| T |
53676098 |
ccaacaagctttcctaccaactggaagtaaaaaaaaaaaaactaaaaataataaaggcacaaaattttgtaaaaaggaggttcatttttggcttatataa |
53675999 |
T |
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| Q |
657 |
caagacaagataaaatgatatacatgcccaccacctttgctt |
698 |
Q |
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| T |
53675998 |
caagacaagataaaatgatatacatgcccaccacctttgctt |
53675957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 53676670 - 53676622
Alignment:
| Q |
17 |
aatgagtaatagaacaagacacataaagaccaacactataaaaaataac |
65 |
Q |
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| T |
53676670 |
aatgagtaatagaacaagacacataaagaccaatactatacaaaataac |
53676622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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