View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9531_low_10 (Length: 257)
Name: NF9531_low_10
Description: NF9531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9531_low_10 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 80 - 257
Target Start/End: Original strand, 108667 - 108844
Alignment:
| Q |
80 |
tatctggtgtgcgtcattctttaaagctttctttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaatatttgattcag |
179 |
Q |
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| T |
108667 |
tatctggtgtgcgtcattctttaaagctttctttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaatatttgattcag |
108766 |
T |
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| Q |
180 |
ggttgtttatttaatacatacagaaaaaggtaattaagtgaaaaatgcagaaaaatttcaacaatttagaggttaact |
257 |
Q |
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| T |
108767 |
ggttgtttatttaatacatacagaaaaaggtaattaagagaaaaatgcagaaaaatttcaacaatttagaggttaact |
108844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 89272 - 89343
Alignment:
| Q |
7 |
aactgtacccttcattgcaactcccagagaagtaagattaataatttcgataactgaaagattgcatataat |
78 |
Q |
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| T |
89272 |
aactgtacccttcgttgcaactcccagagaagtaagattaataatttcgataactgaatgatagcatataat |
89343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 108378 - 108430
Alignment:
| Q |
7 |
aactgtacccttcattgcaactcccagagaagtaagattaataatttcgataa |
59 |
Q |
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| T |
108378 |
aactgtacccttcgttgcaactcccagagaagtaagattaataatttcgataa |
108430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 2708331 - 2708414
Alignment:
| Q |
111 |
tttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaatatttgattcagggttgtttatttaat |
194 |
Q |
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| T |
2708331 |
tttacctgtttgaaactcaattcagtgctacatatgaaaagattcagtcctcattgatatccgattcaaggttgtttatttaat |
2708414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 89372 - 89457
Alignment:
| Q |
81 |
atctggtgtgcgtcattctttaaagctttctttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaa |
167 |
Q |
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| T |
89372 |
atctgatgtgccacattcattaaagctttatttacttgtttgaaactcaattcaatgct-aaaatgaaaggattcagtcatcgctaa |
89457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 2708230 - 2708287
Alignment:
| Q |
21 |
ttgcaactcccagagaagtaagattaataatttcgataactgaaagattgcatataat |
78 |
Q |
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| T |
2708230 |
ttgcaactcccagaaaaggaagattaataatttcagcaacttaaagattgcatataat |
2708287 |
T |
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