View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9531_low_2 (Length: 478)
Name: NF9531_low_2
Description: NF9531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9531_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 42270778 - 42271248
Alignment:
| Q |
1 |
ccaacgacttcatggccgaacatgcttcggataaccaactatggagtcatgttttatcgtaagtttcgtatattgttaattattacaattgtgctatatg |
100 |
Q |
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| T |
42270778 |
ccaacgacttcatggccgaacatgcttcggataaccaactatggagtcatgttttatcgtaagtttcgtaaattgttaattattacaattgtgctatatg |
42270877 |
T |
|
| Q |
101 |
ttatgatgaaaactagtctcaatatcacgaaataatgtgcgttagaatttcagaacacaggnnnnnnnnttcatatgctattggctgaaaacatggatct |
200 |
Q |
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| T |
42270878 |
ttataatgaaaactagtctcaatatcacgaaataatgtgcgttagaatttcagtacaaaggaaaaaaaattcatatgctattgactgaaaacatggatct |
42270977 |
T |
|
| Q |
201 |
gtccaatgatattattttgtgacacttcttaatggaaccccttcatgacagtaaacaatttcctaattattaataaatatctgatgtttttattactata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
42270978 |
gtccaatgatattattttgtgacacttcttaatggaaccccttcatgacagtaaacaatttcctaattattaataaatatctgatgtttttactgctata |
42271077 |
T |
|
| Q |
301 |
tattattgaaactggcaagaaattttattgctatataagagacaaatcttttacagttttaggttagaaattttgtgaagtttaagggtgttttaagtta |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271078 |
tattattgaaactggcaaaaaattttattgctatataagagacaaatcttttacagttttaggttagaaattttgtgaagtttaagggtgttttaagtta |
42271177 |
T |
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| Q |
401 |
ggtatatagggttaaagtatactatggnnnnnnncagtgtgagtaaataatattcttctaggcctttgctt |
471 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42271178 |
ggtatatagggttaaagtatacgatggtttttttcagtgtgagtaaataatattcttctaggcctttgctt |
42271248 |
T |
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