View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9531_low_3 (Length: 387)
Name: NF9531_low_3
Description: NF9531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9531_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 26037342 - 26036963
Alignment:
| Q |
8 |
agaagcaaaggtaaattttcaaattcaaatttcattctgttctataaaccatgaattaacagctaattttgttctgtttggaaagagcttttggtagcta |
107 |
Q |
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| T |
26037342 |
agaagcaaaggtaaattttcaaattcaaatttcattctgttctataaaccatgaattaacagctaattttgttctgtttggaaagagcttttggtagcta |
26037243 |
T |
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| Q |
108 |
tgattgatgtgaagaacagatttaatgttttgaatatttatgaaatatcattcaaatttgatatgttacttcctttctcaaacttacagactggctattg |
207 |
Q |
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| T |
26037242 |
tgattgatgtgaaggacaaatttaatgttttgaatatttatgaaatatcattcaaatttgatatgttacttcctttctcaaacttacagactggctattg |
26037143 |
T |
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| Q |
208 |
caagggctttctatcaaaattcttctatattgattctggacgaagcaacttctgcgttggatagtaaatctgagttattagtgagacaagctgtggagcg |
307 |
Q |
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| T |
26037142 |
caagggctttctatcaaaattcttctatattgattctggacgaagcaacttctgcgttggatagtaaatctgagttattagtgagacaagctgtggagcg |
26037043 |
T |
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| Q |
308 |
tttaatggaaaatcgtacggtatggaaactaaccttttctgttatttgtcatgcgacatataacattatatgatcagcta |
387 |
Q |
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| T |
26037042 |
tttaatggaaaatcgtacggtatggaaactaaccttttctgttatttgtcatgtgacatataacattatatgatcagcta |
26036963 |
T |
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