View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9531_low_5 (Length: 386)
Name: NF9531_low_5
Description: NF9531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9531_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 7907309 - 7906947
Alignment:
| Q |
13 |
gcacagaatacacaactgagtaatccaaatgcatatgatgaaacaaggtactgcaaatttcgtggaacaaaatgcaaacatctaactgaagattattaga |
112 |
Q |
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| T |
7907309 |
gcacagaatacacaactgagtaatccaaatgcatatgatgaaacaaggtactgcaaatttcgtggaacaaaatgcaaacatttcactgaagattattaga |
7907210 |
T |
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| Q |
113 |
tgttacacaaggtactgcaaatttacaaatcataaatcagactagatacatgaaacttaaa-gagctaagagctcgt----acgatcaggaatcagaatt |
207 |
Q |
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| T |
7907209 |
tgttacacaaggtactgcaaatttacaaatcacaaatcagactagatacatgaaacttaaaagagataagagctcattcatacgatcaggaatcagaatt |
7907110 |
T |
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| Q |
208 |
tcgcaccttgcaaagacatcattttgtcttccaagtaagctacttcgatcaagaggcatatccgcagttgttccatagctcatgaaactaggaatcggaa |
307 |
Q |
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| T |
7907109 |
tcgcaccttgcaaagacatcattttgtcttccaagtaagctacttcgaccaagaggcatatcagcagttgttccatagctcatgaaactaggaatcggaa |
7907010 |
T |
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| Q |
308 |
tttgataccttgcaaacaatcatttggctttcctagtaagctacttcgaccaagaggtatatc |
370 |
Q |
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| T |
7907009 |
tttgataccttgcaaacactcatttggctttcctagtaagctacttcgaccaagaggcatatc |
7906947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 144 - 370
Target Start/End: Complemental strand, 7896777 - 7896550
Alignment:
| Q |
144 |
ataaatcagactagatacatgaaacttaaagagctaagagctcgtacgatcaggaatcagaatttcgcaccttgcaaagacatcattttgtcttccaagt |
243 |
Q |
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| T |
7896777 |
ataaatcagactagatacatgaaacttagagagctaagagctcataagttcaggaatcagaatttcgcaccttgcaaagacatcatttggtcttccatgt |
7896678 |
T |
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| Q |
244 |
aagctacttcgatcaagaggcatatccgcagttgttccatagctcatgaaactaggaatcggaatttgataccttgcaaaca-atcatttggctttccta |
342 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||| |||||||||| ||||||| || | ||||||||||||||| | |
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| T |
7896677 |
aagctacttcgaccaagaggcatatcaacagttgttccatagctaatgaaacccggaaacggaatttgacaccttgcgaagacatcatttggctttccca |
7896578 |
T |
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| Q |
343 |
gtaagctacttcgaccaagaggtatatc |
370 |
Q |
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| T |
7896577 |
gtaagctacttcgaccaagaggcatatc |
7896550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 364
Target Start/End: Complemental strand, 7896608 - 7896442
Alignment:
| Q |
211 |
caccttgcaaagacatcattttgtcttccaagtaagctacttcgatcaagaggcatatccgcag------------ttgttccatagctcatgaaactag |
298 |
Q |
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|||||||| |||||||||||| | |||| ||||||||||||||| ||||||||||||| |||| |||||||| ||||||| | || || |
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| T |
7896608 |
caccttgcgaagacatcatttggctttcccagtaagctacttcgaccaagaggcatatcagcaggagtaaccaaatttgttccagagctcataagaccag |
7896509 |
T |
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| Q |
299 |
gaatcggaatttgataccttgcaaaca-atcatttggctttcctagtaagctacttcgaccaagagg |
364 |
Q |
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|| | ||||||| |||||||||| | ||||||||| |||||||||||||||||| | |||||||| |
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| T |
7896508 |
gacttggaattttgcaccttgcaaagacatcatttggttttcctagtaagctactttgtccaagagg |
7896442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 7897660 - 7897625
Alignment:
| Q |
13 |
gcacagaatacacaactgagtaatccaaatgcatat |
48 |
Q |
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| T |
7897660 |
gcacagaatacacaactgagtaatccaaatgcatat |
7897625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 7896502 - 7896453
Alignment:
| Q |
203 |
gaatttcgcaccttgcaaagacatcattttgtcttccaagtaagctactt |
252 |
Q |
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|||||| |||||||||||||||||||||| || |||| |||||||||||| |
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| T |
7896502 |
gaattttgcaccttgcaaagacatcatttggttttcctagtaagctactt |
7896453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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