View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9531_low_6 (Length: 323)
Name: NF9531_low_6
Description: NF9531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9531_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 46098593 - 46098287
Alignment:
| Q |
1 |
catcaatggtcaattcctcaatcatattcccatggttgagtcccctaaggggattgaagacttgaatctcagaacacttgtttggtaggatcattgaaca |
100 |
Q |
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| T |
46098593 |
catcaatggtcaattcctcaatcatattcccatggttgagtcccctaaggggattgaagacttgaatctcagaacacttgtttggtaggatcattgaaca |
46098494 |
T |
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| Q |
101 |
aaggctatgatcatgtgagtgtttaggcataggatacttacgcgatatgacaattgaattgat-acctcgtctgcaggatggaatacagagaggacctca |
199 |
Q |
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| T |
46098493 |
aaggctatgatcatgtgagtgtttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctca |
46098394 |
T |
|
| Q |
200 |
aagcctcgaagatcagaagcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttcc |
299 |
Q |
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| T |
46098393 |
aagcctcgaagatcagaagcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttcc |
46098294 |
T |
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| Q |
300 |
ccaagtg |
306 |
Q |
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| T |
46098293 |
ccaagtg |
46098287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 293
Target Start/End: Complemental strand, 37485230 - 37485064
Alignment:
| Q |
128 |
cataggatacttacgcgatatgacaattgaattgata-cctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcagaagcttcaacc |
226 |
Q |
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| T |
37485230 |
cataggatacctgcgcgctatgacaactgaattgataacctcgtccgttggatgaaacaccgagagcacctcaaagcctcgaagatcattggtatcaaca |
37485131 |
T |
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| Q |
227 |
actggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgt |
293 |
Q |
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| T |
37485130 |
accggatacaaaaaagcacgcgcaccgtgagcactcctgagcatcaggagtgctcctggtgccatgt |
37485064 |
T |
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